Variant report

Variant	rs9818526
Chromosome Location	chr3:112025858-112025859
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11714917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716857	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13073116	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17513726	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2280462	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2399411	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4234416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4550804	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56037521	0.83[ASN][1000 genomes]
rs62264134	0.83[ASN][1000 genomes]
rs62264135	0.83[ASN][1000 genomes]
rs62264136	0.83[ASN][1000 genomes]
rs62264137	0.83[ASN][1000 genomes]
rs6438066	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6438067	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6438068	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[ASN][1000 genomes]
rs6771014	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6774405	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6809034	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7619941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[ASN][1000 genomes]
rs939576	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs939577	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs939578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv3949	chr3:111998512-112044060	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv967052	chr3:112020436-112027937	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112022800-112026400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:112023200-112027000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:112023200-112027000	Weak transcription	HMEC	breast
4	chr3:112023400-112026600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:112023400-112026800	Weak transcription	Placenta	Placenta
6	chr3:112023400-112027000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:112023400-112027000	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr3:112023400-112027000	Weak transcription	Ovary	ovary
9	chr3:112023400-112027200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:112023600-112027000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:112023600-112027000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:112023600-112027000	Weak transcription	Brain Substantia Nigra	brain
13	chr3:112023600-112027200	Weak transcription	NH-A	brain
14	chr3:112023800-112027000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:112024000-112027000	Weak transcription	Right Atrium	heart
16	chr3:112024000-112028800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr3:112024200-112027000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr3:112024200-112027000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr3:112024200-112027000	Weak transcription	Fetal Thymus	thymus
20	chr3:112024400-112026400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:112024400-112026800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:112024600-112026400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr3:112024600-112026400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr3:112024600-112026600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:112024600-112027000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr3:112024600-112027200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr3:112024800-112026200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr3:112024800-112026400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr3:112024800-112026600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr3:112024800-112027000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr3:112025200-112027000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr3:112025200-112027000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:112025200-112027000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr3:112025200-112027000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr3:112025200-112027000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr3:112025200-112034600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr3:112025400-112027000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr3:112025800-112026000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links