Variant report

Variant	rs981987
Chromosome Location	chr11:16739480-16739481
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10766342	0.81[ASN][1000 genomes]
rs10832676	0.81[ASN][1000 genomes]
rs11024014	0.80[ASN][1000 genomes]
rs11024030	0.81[ASN][1000 genomes]
rs11024032	0.81[ASN][1000 genomes]
rs11826990	0.81[ASN][1000 genomes]
rs12223732	0.80[ASN][1000 genomes]
rs12421640	0.81[ASN][1000 genomes]
rs1392999	0.81[ASN][1000 genomes]
rs1532672	0.81[ASN][1000 genomes]
rs2270886	0.81[ASN][1000 genomes]
rs3203295	0.81[ASN][1000 genomes]
rs4757425	0.81[ASN][1000 genomes]
rs4757429	0.81[ASN][1000 genomes]
rs61881966	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16739000-16740000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr11:16739000-16740000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr11:16739200-16739800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:16739200-16739800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr11:16739200-16740000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr11:16739200-16741000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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