Variant report

Variant	rs11024032
Chromosome Location	chr11:16773500-16773501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:16773153-16773514	HepG2	liver:	n/a	n/a
2	POLR2A	chr11:16771873-16773956	K562	blood:	n/a	n/a
3	POLR2A	chr11:16773105-16774043	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr11:16773089-16773601	PFSK-1	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:16757813..16760661-chr11:16773208..16775705,2	MCF-7	breast:
2	chr11:16761666..16763335-chr11:16773162..16775562,2	K562	blood:
3	chr11:16760348..16763335-chr11:16772878..16775562,2	K562	blood:

Variant related genes	Relation type
C11orf58	TF binding region
ENSG00000110693	Chromatin interaction
ENSG00000110696	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10766338	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10766342	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832638	0.81[AMR][1000 genomes]
rs10832644	0.84[AMR][1000 genomes]
rs10832650	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10832651	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10832652	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10832676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832677	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11023985	0.84[AMR][1000 genomes]
rs11023990	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11023991	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11024014	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11024029	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11024030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024037	0.81[EUR][1000 genomes]
rs11529598	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11826990	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12223732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12418941	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12421422	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12421640	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1392999	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1472589	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1532672	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2270886	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3203295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34952258	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4132991	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4237714	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4307685	0.81[AMR][1000 genomes]
rs4447141	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4756858	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4756861	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4757410	0.81[AMR][1000 genomes]
rs4757414	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4757425	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881966	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61883867	0.81[AMR][1000 genomes]
rs61883868	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7481820	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9704273	0.81[AMR][1000 genomes]
rs981987	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16761400-16783000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:16762200-16780200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:16763000-16780600	Strong transcription	Fetal Thymus	thymus
4	chr11:16763200-16776600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:16763200-16780200	Strong transcription	Osteobl	bone
6	chr11:16763400-16780400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr11:16763600-16780400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr11:16764000-16781000	Strong transcription	Primary B cells from peripheral blood	blood
9	chr11:16764200-16778000	Strong transcription	Primary B cells from cord blood	blood
10	chr11:16764400-16777800	Strong transcription	Rectal Mucosa Donor 31	rectum
11	chr11:16764400-16780000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr11:16764400-16780400	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr11:16764600-16779600	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:16764600-16780200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:16764600-16780400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:16764600-16780400	Strong transcription	A549	lung
17	chr11:16764600-16781600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:16764800-16773600	Strong transcription	NHEK	skin
19	chr11:16765000-16780200	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr11:16765000-16780400	Strong transcription	Dnd41	blood
21	chr11:16765400-16774400	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr11:16765400-16780000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:16765400-16780400	Strong transcription	Duodenum Mucosa	Duodenum
24	chr11:16765600-16777800	Strong transcription	HMEC	breast
25	chr11:16765800-16774000	Strong transcription	GM12878-XiMat	blood
26	chr11:16765800-16775800	Strong transcription	Colonic Mucosa	Colon
27	chr11:16765800-16778000	Strong transcription	HUVEC	blood vessel
28	chr11:16765800-16779600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:16765800-16779800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr11:16765800-16780200	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr11:16765800-16780400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:16765800-16780600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:16765800-16780600	Strong transcription	Placenta	Placenta
34	chr11:16766000-16775800	Strong transcription	HepG2	liver
35	chr11:16766000-16778400	Strong transcription	Ovary	ovary
36	chr11:16766000-16779800	Strong transcription	Hela-S3	cervix
37	chr11:16766000-16780200	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr11:16766000-16780200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr11:16766000-16780800	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr11:16766000-16781000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:16766200-16776800	Strong transcription	HSMM	muscle
42	chr11:16766200-16778800	Strong transcription	Liver	Liver
43	chr11:16766200-16780200	Strong transcription	Primary hematopoietic stem cells	blood
44	chr11:16766200-16780600	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr11:16766200-16780600	Strong transcription	Fetal Intestine Large	intestine
46	chr11:16766400-16777800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:16766400-16778000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:16766400-16779800	Strong transcription	NH-A	brain
49	chr11:16766400-16780400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr11:16766600-16777600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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