Variant report

Variant	rs10832677
Chromosome Location	chr11:16785697-16785698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16781045..16782906-chr11:16784364..16786696,2	K562	blood:
2	chr11:16783685..16787549-chr11:16799094..16802277,3	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10766338	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10766342	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10832644	0.82[AMR][1000 genomes]
rs10832650	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10832651	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10832652	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10832676	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11023985	0.82[AMR][1000 genomes]
rs11023990	0.83[AMR][1000 genomes]
rs11023991	0.82[AMR][1000 genomes]
rs11024014	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11024030	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11024032	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11024037	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11529598	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11826990	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12223732	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12418941	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12421422	0.83[AMR][1000 genomes]
rs12421640	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1392999	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1472589	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1532672	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2270886	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3203295	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34952258	0.87[AMR][1000 genomes]
rs4237714	0.87[AMR][1000 genomes]
rs4447141	0.81[AMR][1000 genomes]
rs4756858	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4756861	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4757414	0.83[AMR][1000 genomes]
rs4757425	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4757429	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61881966	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61883867	0.82[AMR][1000 genomes]
rs61883868	0.81[AMR][1000 genomes]
rs7481820	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16773000-16789400	Weak transcription	Esophagus	oesophagus
2	chr11:16775000-16799200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:16775600-16798200	Weak transcription	Gastric	stomach
4	chr11:16775800-16801000	Weak transcription	Spleen	Spleen
5	chr11:16775800-16804000	Weak transcription	Colonic Mucosa	Colon
6	chr11:16776400-16787200	Weak transcription	Lung	lung
7	chr11:16776600-16797400	Weak transcription	Pancreas	Pancrea
8	chr11:16776600-16798400	Weak transcription	Brain Anterior Caudate	brain
9	chr11:16777000-16803800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:16777200-16826000	Weak transcription	Brain Substantia Nigra	brain
11	chr11:16777800-16797200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:16780000-16796600	Weak transcription	Stomach Mucosa	stomach
13	chr11:16780200-16795600	Weak transcription	Liver	Liver
14	chr11:16780200-16796600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:16780200-16804600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:16780400-16786400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr11:16780400-16788800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr11:16780400-16797200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr11:16780600-16785800	Weak transcription	Brain Germinal Matrix	brain
20	chr11:16780600-16787600	Weak transcription	Adipose Nuclei	Adipose
21	chr11:16780600-16797000	Weak transcription	Fetal Brain Female	brain
22	chr11:16780600-16798200	Weak transcription	Fetal Intestine Large	intestine
23	chr11:16780600-16799000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:16781000-16796600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:16781800-16789600	Weak transcription	Fetal Heart	heart
26	chr11:16782000-16797000	Weak transcription	Right Ventricle	heart
27	chr11:16782800-16786000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:16783400-16785800	Weak transcription	Fetal Intestine Small	intestine
29	chr11:16784400-16791200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:16785000-16785800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:16785200-16791200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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