Variant report

Variant	rs10832650
Chromosome Location	chr11:16634966-16634967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15792378..15793080-chr11:16634898..16635815,3	K562	blood:
2	chr11:16634578..16636953-chr11:16760027..16762559,3	K562	blood:
3	chr11:16213881..16214546-chr11:16634890..16635879,2	K562	blood:
4	chr11:15848101..15848993-chr11:16634904..16635824,3	K562	blood:
5	chr11:16212664..16213531-chr11:16634934..16635871,3	K562	blood:

Variant related genes	Relation type
ENSG00000110696	Chromatin interaction
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10766338	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10766342	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10832632	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10832636	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10832638	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10832644	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10832645	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10832651	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832676	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10832677	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11023985	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11023990	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11023991	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11024014	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11024030	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11024032	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11529598	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11826990	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12223732	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12418604	0.86[EUR][1000 genomes]
rs12418941	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12421422	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12421640	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12799024	0.87[ASN][1000 genomes]
rs1392999	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1472589	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1532672	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2270886	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3203295	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34952258	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4132991	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4237714	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4307685	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4447141	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4756858	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4756861	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4757410	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4757414	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4757425	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4757429	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61881966	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61883864	0.87[ASN][1000 genomes]
rs61883867	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61883868	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7481820	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9704273	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16631800-16635000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:16632600-16635000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:16632800-16635000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:16632800-16636000	Bivalent/Poised TSS	Fetal Kidney	kidney
5	chr11:16632800-16636200	Bivalent/Poised TSS	Fetal Brain Female	brain
6	chr11:16633000-16635000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
7	chr11:16633200-16635000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:16633200-16635000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:16633200-16635400	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
10	chr11:16633200-16636200	Active TSS	Right Atrium	heart
11	chr11:16633200-16636400	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr11:16633400-16635400	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:16633600-16635000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:16633600-16635000	Enhancers	Gastric	stomach
15	chr11:16633800-16636000	Active TSS	Right Ventricle	heart
16	chr11:16634200-16635000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
17	chr11:16634200-16635000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:16634200-16635000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr11:16634200-16635000	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
20	chr11:16634200-16635000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:16634200-16635000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:16634200-16635000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
23	chr11:16634200-16635000	Bivalent Enhancer	NHDF-Ad	bronchial
24	chr11:16634200-16635200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:16634200-16635200	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
26	chr11:16634200-16635200	Flanking Bivalent TSS/Enh	NH-A	brain
27	chr11:16634200-16635400	Bivalent Enhancer	Stomach Mucosa	stomach
28	chr11:16634200-16635800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
29	chr11:16634200-16636000	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
30	chr11:16634200-16636000	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
31	chr11:16634200-16636000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
32	chr11:16634200-16636000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
33	chr11:16634200-16636000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
34	chr11:16634200-16636000	Flanking Active TSS	Pancreas	Pancrea
35	chr11:16634200-16636000	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
36	chr11:16634200-16636000	Bivalent/Poised TSS	HSMM	muscle
37	chr11:16634200-16636000	Flanking Bivalent TSS/Enh	NHEK	skin
38	chr11:16634200-16636200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
39	chr11:16634400-16635000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
40	chr11:16634400-16635000	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr11:16634400-16635000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
42	chr11:16634400-16635000	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
43	chr11:16634400-16635000	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:16634400-16635000	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
45	chr11:16634400-16635000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
46	chr11:16634400-16635200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
47	chr11:16634400-16635200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:16634400-16635200	Flanking Bivalent TSS/Enh	Brain Substantia Nigra	brain
49	chr11:16634400-16635200	Flanking Bivalent TSS/Enh	A549	lung
50	chr11:16634400-16635400	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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