Variant report

Variant	rs12418604
Chromosome Location	chr11:16557996-16557997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10500830	0.86[EUR][1000 genomes]
rs10766327	0.87[EUR][1000 genomes]
rs10766338	0.80[EUR][1000 genomes]
rs10832616	0.86[EUR][1000 genomes]
rs10832617	0.86[EUR][1000 genomes]
rs10832619	0.87[EUR][1000 genomes]
rs10832620	0.87[EUR][1000 genomes]
rs10832624	0.87[EUR][1000 genomes]
rs10832625	0.87[EUR][1000 genomes]
rs10832626	0.87[EUR][1000 genomes]
rs10832631	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10832632	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10832636	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10832638	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10832644	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10832645	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832650	0.86[EUR][1000 genomes]
rs10832651	0.86[EUR][1000 genomes]
rs10832652	0.88[EUR][1000 genomes]
rs11023964	0.87[EUR][1000 genomes]
rs11023965	0.87[EUR][1000 genomes]
rs11023969	0.87[EUR][1000 genomes]
rs11023971	0.87[EUR][1000 genomes]
rs11023985	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11023990	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11023991	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11024014	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11529135	0.87[EUR][1000 genomes]
rs11529591	0.87[EUR][1000 genomes]
rs11529598	0.82[EUR][1000 genomes]
rs11605526	0.86[EUR][1000 genomes]
rs12364390	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12418941	0.82[EUR][1000 genomes]
rs12421422	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12799024	0.89[AMR][1000 genomes]
rs1472589	0.84[EUR][1000 genomes]
rs34952258	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4132991	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4237714	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4259791	0.87[EUR][1000 genomes]
rs4307685	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4447141	0.90[EUR][1000 genomes]
rs4491181	0.87[EUR][1000 genomes]
rs4550186	0.87[EUR][1000 genomes]
rs4756858	0.88[EUR][1000 genomes]
rs4756861	0.82[EUR][1000 genomes]
rs4757410	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4757414	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61881805	0.86[EUR][1000 genomes]
rs61881829	0.87[EUR][1000 genomes]
rs61881830	0.87[EUR][1000 genomes]
rs61883864	0.87[AMR][1000 genomes]
rs61883867	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61883868	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7122873	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7481820	0.88[EUR][1000 genomes]
rs7483029	0.87[EUR][1000 genomes]
rs9666320	0.87[EUR][1000 genomes]
rs9704273	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1035768	chr11:16530440-16578566	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16544600-16558200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:16551400-16558600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:16556400-16558200	Weak transcription	Left Ventricle	heart
4	chr11:16557200-16558200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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