Variant report

Variant	rs11605526
Chromosome Location	chr11:16509918-16509919
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:16509774-16509974	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16508192..16511548-chr11:16513536..16517052,6	K562	blood:

Variant related genes	Relation type
ENSG00000213785	TF binding region

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1004283	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10500830	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10741698	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10766324	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10766325	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10766327	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832602	0.81[EUR][1000 genomes]
rs10832603	0.81[EUR][1000 genomes]
rs10832604	0.82[EUR][1000 genomes]
rs10832607	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10832609	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10832610	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10832616	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832617	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832620	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832624	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832625	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832626	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832631	0.85[EUR][1000 genomes]
rs10832632	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10832636	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10832638	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10832644	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10832645	0.85[EUR][1000 genomes]
rs11023932	0.81[EUR][1000 genomes]
rs11023934	0.82[EUR][1000 genomes]
rs11023940	0.82[EUR][1000 genomes]
rs11023942	0.82[EUR][1000 genomes]
rs11023943	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11023947	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11023964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023965	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023969	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023971	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023985	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11023990	0.82[EUR][1000 genomes]
rs11023991	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11529135	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11529591	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12221729	0.82[EUR][1000 genomes]
rs12221945	0.81[EUR][1000 genomes]
rs12221946	0.81[EUR][1000 genomes]
rs12222249	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12364390	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12418604	0.86[EUR][1000 genomes]
rs12421422	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12799024	0.86[AFR][1000 genomes]
rs1393924	0.81[EUR][1000 genomes]
rs1503440	0.81[EUR][1000 genomes]
rs16933105	0.81[EUR][1000 genomes]
rs16933117	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1948824	0.84[EUR][1000 genomes]
rs2134610	0.82[EUR][1000 genomes]
rs2174164	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs297338	0.82[AMR][1000 genomes]
rs34952258	0.81[EUR][1000 genomes]
rs4132991	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4237714	0.81[EUR][1000 genomes]
rs4259791	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4307685	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4491181	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4550186	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4756850	0.82[EUR][1000 genomes]
rs4756851	0.81[EUR][1000 genomes]
rs4757397	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4757398	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4757399	0.82[EUR][1000 genomes]
rs4757402	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4757403	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4757410	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4757414	0.82[EUR][1000 genomes]
rs61881805	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61881829	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61881830	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61883215	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61883864	0.86[AFR][1000 genomes]
rs61883868	0.83[EUR][1000 genomes]
rs7122873	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7483029	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7935820	0.82[EUR][1000 genomes]
rs7951243	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7951760	0.84[EUR][1000 genomes]
rs9666320	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9704273	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16461600-16510000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:16495200-16510200	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:16497200-16516600	Weak transcription	Left Ventricle	heart
4	chr11:16506200-16516200	Weak transcription	Right Ventricle	heart
5	chr11:16506200-16516400	Weak transcription	Psoas Muscle	Psoas
6	chr11:16506200-16517200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:16509000-16510200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:16509600-16510400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr11:16509600-16516600	Weak transcription	Pancreas	Pancrea
10	chr11:16509800-16510200	Weak transcription	Fetal Heart	heart
11	chr11:16509800-16510400	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr11:16509800-16511000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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