Variant report

Variant	rs61883864
Chromosome Location	chr11:16570750-16570751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16565643..16568229-chr11:16568917..16572483,3	K562	blood:
2	chr11:16569309..16571470-chr11:16575430..16577842,2	K562	blood:
3	chr11:16569176..16571470-chr11:16576342..16578744,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10500830	0.83[AFR][1000 genomes]
rs10766327	0.81[ASN][1000 genomes]
rs10766338	0.80[ASN][1000 genomes]
rs10832616	0.88[AFR][1000 genomes]
rs10832617	0.83[AFR][1000 genomes]
rs10832619	0.86[AFR][1000 genomes]
rs10832624	0.81[ASN][1000 genomes]
rs10832625	0.81[ASN][1000 genomes]
rs10832626	0.81[ASN][1000 genomes]
rs10832631	0.80[AMR][1000 genomes]
rs10832632	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10832636	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10832638	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10832644	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10832645	0.84[AMR][1000 genomes]
rs10832650	0.87[ASN][1000 genomes]
rs10832651	0.87[ASN][1000 genomes]
rs10832652	0.87[ASN][1000 genomes]
rs11023964	0.86[AFR][1000 genomes]
rs11023965	0.91[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11023969	0.81[ASN][1000 genomes]
rs11023971	0.91[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11023985	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11023990	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11023991	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11024014	0.80[AMR][1000 genomes]
rs11529135	0.81[ASN][1000 genomes]
rs11529591	0.81[ASN][1000 genomes]
rs11605526	0.86[AFR][1000 genomes]
rs12364390	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12418604	0.87[AMR][1000 genomes]
rs12418941	0.81[ASN][1000 genomes]
rs12421422	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12799024	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34952258	0.87[ASN][1000 genomes]
rs4132991	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4237714	0.87[ASN][1000 genomes]
rs4259791	0.81[ASN][1000 genomes]
rs4307685	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4491181	0.91[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4756858	0.84[ASN][1000 genomes]
rs4757410	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4757414	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61881805	0.83[AFR][1000 genomes]
rs61881829	0.81[ASN][1000 genomes]
rs61881830	0.91[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs61883867	0.81[AMR][1000 genomes]
rs61883868	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7481820	0.84[ASN][1000 genomes]
rs7483029	0.91[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9704273	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1035768	chr11:16530440-16578566	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16567400-16573000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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