Variant report

Variant	rs4307685
Chromosome Location	chr11:16549236-16549237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10500830	0.94[CEU][hapmap];0.80[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10741698	0.89[CEU][hapmap];0.93[JPT][hapmap]
rs10766324	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs10766327	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10766338	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10766342	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10832604	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs10832607	0.89[CEU][hapmap];0.93[JPT][hapmap]
rs10832609	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs10832610	0.89[CEU][hapmap];0.93[JPT][hapmap]
rs10832616	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10832617	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10832619	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10832620	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10832624	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10832625	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10832626	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10832631	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10832632	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832636	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832638	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832644	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832645	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10832650	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10832651	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10832652	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10832676	0.83[AMR][1000 genomes]
rs11023934	0.89[CEU][hapmap];0.93[JPT][hapmap]
rs11023942	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs11023947	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs11023964	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11023965	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11023969	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11023971	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11023985	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023990	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11023991	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11024014	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11024030	0.83[AMR][1000 genomes]
rs11024032	0.81[AMR][1000 genomes]
rs11529135	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11529591	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11529598	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11605526	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11826990	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12221729	0.89[CEU][hapmap];0.92[JPT][hapmap]
rs12223732	0.82[AMR][1000 genomes]
rs12364390	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12418604	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12418941	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12421422	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12421640	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12799024	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1392999	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1393924	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs1393926	0.93[JPT][hapmap]
rs1472589	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1503440	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs1532672	0.85[AMR][1000 genomes]
rs16933105	0.89[CEU][hapmap];0.93[JPT][hapmap]
rs16933117	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs1948824	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs2174164	0.89[CEU][hapmap];0.93[JPT][hapmap]
rs2270886	0.83[AMR][1000 genomes]
rs297325	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs297335	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs297337	0.93[CEU][hapmap];0.86[JPT][hapmap]
rs297338	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs3203295	0.82[AMR][1000 genomes]
rs34952258	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4132991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4237714	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4259791	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4447141	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4491181	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4550186	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4756850	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs4756851	0.93[JPT][hapmap]
rs4756858	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4756861	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4757397	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs4757398	0.89[CEU][hapmap];0.93[JPT][hapmap]
rs4757402	0.88[CEU][hapmap];0.87[JPT][hapmap]
rs4757403	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs4757410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4757414	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4757425	0.85[AMR][1000 genomes]
rs4757429	0.83[AMR][1000 genomes]
rs61881805	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61881829	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61881830	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61881966	0.81[AMR][1000 genomes]
rs61883864	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61883867	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61883868	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7122873	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7481820	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7483029	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7951243	0.94[CEU][hapmap];0.93[JPT][hapmap]
rs7951760	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs9666320	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9704273	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1035768	chr11:16530440-16578566	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16544600-16558200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:16548400-16552400	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr11:16548600-16552400	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr11:16548800-16549400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
5	chr11:16549200-16549400	Enhancers	Left Ventricle	heart
6	chr11:16549200-16552000	Enhancers	Pancreatic Islets	Pancreatic Islet

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