Variant report

Variant	rs9820041
Chromosome Location	chr3:84806907-84806908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1598082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1598084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021735	1.00[AMR][1000 genomes]
rs6797731	1.00[AMR][1000 genomes]
rs72909341	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843238	1.00[AMR][1000 genomes]
rs73845127	1.00[AMR][1000 genomes]
rs73845130	1.00[AMR][1000 genomes]
rs73845154	1.00[AMR][1000 genomes]
rs9833272	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9875172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381298	chr3:84689266-85030314	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv877083	chr3:84720982-84819147	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1001316	chr3:84773522-85071342	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv877084	chr3:84779079-84819147	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
6	nsv460746	chr3:84779079-84833513	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv877085	chr3:84779079-84911212	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv877086	chr3:84785709-84809350	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
9	nsv877087	chr3:84785709-84819147	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
10	nsv877088	chr3:84790582-84819147	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:84806400-84808800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:84806600-84808400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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