Variant report

Variant	rs9820082
Chromosome Location	chr3:102313483-102313484
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10049340	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10212283	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs16845150	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6441666	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6784279	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6796062	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6797291	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6804268	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6805491	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs72944862	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7355969	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7615373	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7615483	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7626675	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7626764	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7629112	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9290722	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9290728	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9829986	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9837641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9838469	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9873647	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9875369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9876234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9881260	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1009392	chr3:102199756-102631205	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv1843717	chr3:102251299-102364297	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv3347944	chr3:102312462-102314410	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102312600-102314000	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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