Variant report

Variant	rs9826402
Chromosome Location	chr3:151271420-151271421
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs4396876	0.86[ASN][1000 genomes]
rs4425232	0.86[ASN][1000 genomes]
rs4679864	0.81[ASN][1000 genomes]
rs6776733	0.86[ASN][1000 genomes]
rs6779609	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7609706	0.83[ASN][1000 genomes]
rs7629779	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7644126	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9829707	0.83[ASN][1000 genomes]
rs9831576	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv877650	chr3:151174010-151314449	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151257400-151271600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:151266200-151274600	Weak transcription	Aorta	Aorta
3	chr3:151268800-151274000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:151268800-151275200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:151269000-151271600	Weak transcription	Fetal Lung	lung
6	chr3:151269000-151273200	Weak transcription	Adipose Nuclei	Adipose
7	chr3:151269200-151271600	Weak transcription	Ovary	ovary
8	chr3:151269600-151272000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr3:151269800-151272000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr3:151270400-151273000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:151270400-151273800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:151270600-151271600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:151270600-151274800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:151270800-151273000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:151270800-151274600	Weak transcription	Dnd41	blood
16	chr3:151270800-151275000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:151270800-151277000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:151271200-151272400	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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