Variant report

Variant	rs7644126
Chromosome Location	chr3:151266784-151266785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1448333	0.86[EUR][1000 genomes]
rs4396876	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4425232	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4679864	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6440771	0.96[EUR][1000 genomes]
rs6776733	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6779609	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7609706	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7623338	0.94[CEU][hapmap];0.89[CHB][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7629779	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7635131	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs7649833	0.89[CEU][hapmap]
rs9826402	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9829707	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9831576	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv877650	chr3:151174010-151314449	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151256800-151268600	Weak transcription	Right Atrium	heart
2	chr3:151257400-151271600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:151257600-151270000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:151261400-151268600	Weak transcription	Esophagus	oesophagus
5	chr3:151261400-151268600	Weak transcription	Gastric	stomach
6	chr3:151261600-151268200	Weak transcription	Ovary	ovary
7	chr3:151261600-151268600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:151263200-151269000	Enhancers	Fetal Lung	lung
9	chr3:151263400-151267800	Weak transcription	Hela-S3	cervix
10	chr3:151264200-151268400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:151265400-151269000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:151265600-151267400	Enhancers	K562	blood
13	chr3:151266200-151268000	Weak transcription	Adipose Nuclei	Adipose
14	chr3:151266200-151274600	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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