Variant report
| Variant | rs6440771 |
|---|---|
| Chromosome Location | chr3:151305888-151305889 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:151304607..151306547-chr3:151313096..151315639,2 | K562 | blood: | |
| 2 | chr3:151303163..151304744-chr3:151305743..151307789,2 | K562 | blood: | |
| 3 | chr3:151301981..151304744-chr3:151305743..151307558,2 | K562 | blood: | |
| 4 | chr3:151304082..151306609-chr3:151340785..151343221,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs1448333 | 0.89[EUR][1000 genomes] |
| rs4396876 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.96[EUR][1000 genomes] |
| rs4425232 | 0.96[EUR][1000 genomes] |
| rs4679864 | 0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6776733 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6779609 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7609706 | 0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7623338 | 1.00[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs7629779 | 1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7644126 | 0.96[EUR][1000 genomes] |
| rs7649833 | 0.89[CEU][hapmap] |
| rs9829707 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs9831576 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv995048 | chr3:151114074-151560019 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv877650 | chr3:151174010-151314449 | Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv3437884 | chr3:151287303-151309272 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv4064 | chr3:151298187-151370986 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:151299400-151307000 | Weak transcription | NHDF-Ad | bronchial |
