Variant report

Variant	rs9827110
Chromosome Location	chr3:161085596-161085597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs28425747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28548802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59193340	1.00[EUR][1000 genomes]
rs9809257	1.00[EUR][1000 genomes]
rs9811652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9813578	1.00[EUR][1000 genomes]
rs9813631	1.00[EUR][1000 genomes]
rs9813991	1.00[EUR][1000 genomes]
rs9815630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9826921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9831694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9832567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9836154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9836308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9836554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9838693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9844860	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9850424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9856366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9858890	1.00[EUR][1000 genomes]
rs9859595	1.00[EUR][1000 genomes]
rs9860998	1.00[EUR][1000 genomes]
rs9863247	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
3	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
4	nsv963570	chr3:161076656-161088849	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161059800-161089200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:161081800-161087200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:161084400-161085600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:161084400-161087400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:161084400-161088400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:161084400-161088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:161084600-161088200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:161085200-161085600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr3:161085200-161085800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr3:161085200-161087600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:161085400-161085600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr3:161085400-161085800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr3:161085400-161088200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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