Variant report

Variant	rs59193340
Chromosome Location	chr3:161102287-161102288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161097507..161100487-chr3:161101328..161104049,2	K562	blood:
2	chr3:160344731..160346992-chr3:161101711..161103995,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12486111	0.90[ASN][1000 genomes]
rs12486998	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12487002	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12488127	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12491623	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12494520	0.94[ASN][1000 genomes]
rs1450518	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2035499	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28425747	1.00[EUR][1000 genomes]
rs28548802	1.00[EUR][1000 genomes]
rs56839556	0.84[ASN][1000 genomes]
rs58851337	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs58892449	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59368066	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6781086	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6787697	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6793980	0.88[ASN][1000 genomes]
rs73878323	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73878329	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7614130	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7629841	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9809257	1.00[EUR][1000 genomes]
rs9811652	1.00[EUR][1000 genomes]
rs9813578	1.00[EUR][1000 genomes]
rs9813631	1.00[EUR][1000 genomes]
rs9813991	1.00[EUR][1000 genomes]
rs9815630	1.00[EUR][1000 genomes]
rs9826921	1.00[EUR][1000 genomes]
rs9827110	1.00[EUR][1000 genomes]
rs9831694	1.00[EUR][1000 genomes]
rs9832567	1.00[EUR][1000 genomes]
rs9836154	1.00[EUR][1000 genomes]
rs9836308	1.00[EUR][1000 genomes]
rs9836554	1.00[EUR][1000 genomes]
rs9838693	1.00[EUR][1000 genomes]
rs9844860	1.00[EUR][1000 genomes]
rs9850424	1.00[EUR][1000 genomes]
rs9856366	1.00[EUR][1000 genomes]
rs9858890	1.00[EUR][1000 genomes]
rs9859595	1.00[EUR][1000 genomes]
rs9860998	1.00[EUR][1000 genomes]
rs9863247	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
3	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
4	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
5	nsv518101	chr3:161102097-161102861	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161091400-161102800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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