Variant report

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:161034414..161036485-chr3:161127790..161130788,3	MCF-7	breast:
2	chr3:161003253..161016100-chr3:161121496..161137189,33	MCF-7	breast:
3	chr3:161127684..161130255-chr3:161157024..161159447,2	MCF-7	breast:
4	chr3:160943414..160948630-chr3:161124537..161130455,7	MCF-7	breast:
5	chr3:160934874..160951087-chr3:161118055..161142485,77	MCF-7	breast:
6	chr3:160937705..160941241-chr3:161127569..161134417,11	MCF-7	breast:
7	chr19:51869577..51872275-chr3:161126868..161129523,2	MCF-7	breast:
8	chr3:161007555..161015806-chr3:161127103..161142651,19	MCF-7	breast:
9	chr21:41759432..41760978-chr3:161127056..161129807,2	MCF-7	breast:
10	chr3:160813229..160815259-chr3:161126741..161128442,3	MCF-7	breast:
11	chr3:160809924..160811857-chr3:161127749..161129534,3	MCF-7	breast:
12	chr3:160818015..160820994-chr3:161127414..161132752,10	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12486111	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12486998	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12487002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12488127	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12491623	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12494520	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13319558	0.85[AMR][1000 genomes]
rs1450518	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2035499	0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2306209	0.85[AMR][1000 genomes]
rs56839556	0.94[ASN][1000 genomes]
rs58851337	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58892449	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59193340	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs59368066	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6441375	0.82[AMR][1000 genomes]
rs6781086	0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6787697	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6793980	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73878309	0.85[AMR][1000 genomes]
rs73878320	0.86[AFR][1000 genomes]
rs73878329	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7614130	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7629841	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7651924	0.82[AMR][1000 genomes]
rs9822705	0.85[AMR][1000 genomes]
rs9851699	0.82[AMR][1000 genomes]
rs9855572	0.82[AMR][1000 genomes]
rs9860980	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
3	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
4	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161123200-161132000	Enhancers	Stomach Mucosa	stomach
2	chr3:161124000-161133400	Weak transcription	Fetal Lung	lung
3	chr3:161124800-161131000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:161124800-161131000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:161125600-161129600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:161125600-161137000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:161126200-161131000	Weak transcription	Gastric	stomach
8	chr3:161126800-161128200	Enhancers	Hela-S3	cervix
9	chr3:161127000-161128400	Enhancers	HMEC	breast
10	chr3:161127200-161128200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:161127600-161128200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:161127600-161128200	Enhancers	NHEK	skin
13	chr3:161127600-161131000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr3:161127800-161128200	Enhancers	Esophagus	oesophagus
15	chr3:161128000-161131600	Weak transcription	HUVEC	blood vessel
16	chr3:161128000-161133200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr3:161128000-161133400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search: