Variant report

Variant	rs12494520
Chromosome Location	chr3:161104515-161104516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161102931..161104858-chr3:161108932..161110703,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1017799	0.90[JPT][hapmap];0.82[AMR][1000 genomes]
rs12486111	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12486998	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12487002	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12488127	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12490149	0.89[JPT][hapmap];0.84[AMR][1000 genomes]
rs12491623	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13319558	0.90[JPT][hapmap];0.82[AMR][1000 genomes]
rs13319771	0.88[JPT][hapmap]
rs1450518	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2035499	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2306209	0.89[JPT][hapmap];0.82[AMR][1000 genomes]
rs4352387	0.89[JPT][hapmap]
rs4468992	0.90[JPT][hapmap]
rs56839556	0.90[ASN][1000 genomes]
rs58851337	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58892449	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs59193340	0.94[ASN][1000 genomes]
rs59368066	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59757775	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6441372	0.82[AMR][1000 genomes]
rs6441375	0.89[JPT][hapmap];0.84[AMR][1000 genomes]
rs6775446	0.89[JPT][hapmap]
rs6775931	0.89[JPT][hapmap]
rs6778186	0.82[AMR][1000 genomes]
rs6781086	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6782415	0.89[JPT][hapmap]
rs6782518	0.89[JPT][hapmap]
rs6785714	0.84[JPT][hapmap]
rs6787697	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6793980	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73017340	0.82[AMR][1000 genomes]
rs73878309	0.82[AMR][1000 genomes]
rs73878323	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73878329	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7614130	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7624791	0.82[AMR][1000 genomes]
rs7626773	0.90[JPT][hapmap];0.82[AMR][1000 genomes]
rs7629841	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7634299	0.90[JPT][hapmap]
rs7651924	0.90[JPT][hapmap];0.84[AMR][1000 genomes]
rs7652624	0.82[AMR][1000 genomes]
rs9812574	0.82[AMR][1000 genomes]
rs9818470	0.82[AMR][1000 genomes]
rs9819793	0.86[JPT][hapmap]
rs9822705	0.82[AMR][1000 genomes]
rs9822916	0.89[JPT][hapmap]
rs9824805	0.90[JPT][hapmap]
rs9833270	0.84[AMR][1000 genomes]
rs9835530	0.90[JPT][hapmap];0.82[AMR][1000 genomes]
rs9838945	0.82[AMR][1000 genomes]
rs9842290	0.82[AMR][1000 genomes]
rs9847842	0.89[JPT][hapmap]
rs9850455	0.80[JPT][hapmap]
rs9851699	0.90[AMR][1000 genomes]
rs9855572	0.84[AMR][1000 genomes]
rs9859641	0.89[JPT][hapmap]
rs9860980	0.88[JPT][hapmap];0.82[AMR][1000 genomes]
rs9862867	0.90[JPT][hapmap];0.82[AMR][1000 genomes]
rs9872514	0.80[JPT][hapmap]
rs9876077	0.82[AMR][1000 genomes]
rs9877309	0.86[JPT][hapmap]
rs9880536	0.90[JPT][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
3	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
4	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161102800-161106200	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr3:161103200-161105600	Enhancers	Stomach Mucosa	stomach
3	chr3:161103200-161105800	Enhancers	HepG2	liver
4	chr3:161103800-161108200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr3:161104200-161106200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr3:161104400-161107600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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