Variant report

Variant	rs7629841
Chromosome Location	chr3:161099277-161099278
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161097507..161100487-chr3:161101328..161104049,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1017799	0.81[JPT][hapmap]
rs12486111	1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12486998	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12487002	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12488127	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12491623	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12494520	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13319558	0.81[JPT][hapmap];0.85[AMR][1000 genomes]
rs1450518	1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2035499	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2306209	0.85[AMR][1000 genomes]
rs4468992	0.81[JPT][hapmap]
rs56839556	0.81[ASN][1000 genomes]
rs58851337	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58892449	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59193340	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs59368066	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6441375	0.82[AMR][1000 genomes]
rs6781086	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6787697	0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6793980	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73878309	0.85[AMR][1000 genomes]
rs73878323	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73878329	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7614130	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7626773	0.81[JPT][hapmap]
rs7634299	0.81[JPT][hapmap]
rs7651924	0.81[JPT][hapmap];0.82[AMR][1000 genomes]
rs9822705	0.85[AMR][1000 genomes]
rs9824805	0.81[JPT][hapmap]
rs9835530	0.81[JPT][hapmap]
rs9855572	0.82[AMR][1000 genomes]
rs9860980	0.85[AMR][1000 genomes]
rs9862867	0.81[JPT][hapmap]
rs9880536	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
3	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
4	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161091400-161102800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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