Variant report

Variant	rs9833198
Chromosome Location	chr3:17189061-17189062
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13318410	1.00[AMR][1000 genomes]
rs58073268	1.00[AMR][1000 genomes]
rs61442017	1.00[AMR][1000 genomes]
rs7610674	1.00[AMR][1000 genomes]
rs7645732	1.00[AMR][1000 genomes]
rs9985227	1.00[AMR][1000 genomes]
rs9985363	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008636	chr3:17173415-17208267	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17179400-17193000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:17181200-17193200	Weak transcription	Primary B cells from cord blood	blood
3	chr3:17182400-17194400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:17183000-17193000	Weak transcription	Aorta	Aorta
5	chr3:17183000-17198800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:17183400-17194800	Weak transcription	Left Ventricle	heart
7	chr3:17183600-17193200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:17183600-17196400	Weak transcription	Fetal Heart	heart
9	chr3:17184200-17192400	Weak transcription	Primary T cells from cord blood	blood
10	chr3:17185800-17194600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr3:17186000-17193000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr3:17186000-17195200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr3:17186600-17195200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:17188800-17192000	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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