Variant report

Variant	rs9833533
Chromosome Location	chr3:60568253-60568254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17031618	1.00[GIH][hapmap];0.86[MKK][hapmap]
rs17063507	1.00[GIH][hapmap];0.86[MKK][hapmap]
rs28430306	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73107355	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7651468	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs9880898	1.00[GIH][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60555400-60573600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:60561800-60573400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:60562400-60568600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:60565000-60570800	Weak transcription	Primary B cells from cord blood	blood
5	chr3:60566000-60569600	Weak transcription	Osteobl	bone
6	chr3:60566000-60569800	Weak transcription	NH-A	brain
7	chr3:60566000-60573800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:60566200-60574400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:60566400-60568800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:60566600-60569000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr3:60566600-60570800	Weak transcription	Aorta	Aorta
12	chr3:60566800-60568600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:60567200-60568400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:60567600-60568400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr3:60567800-60568800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr3:60567800-60568800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr3:60568000-60568800	Enhancers	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links