Variant report

Variant	rs9833750
Chromosome Location	chr3:51196423-51196424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11716837	1.00[CEU][hapmap];0.84[TSI][hapmap]
rs9869826	1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap]
rs9870900	0.86[MKK][hapmap]
rs9879725	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51168200-51210600	Weak transcription	Brain Angular Gyrus	brain
2	chr3:51182200-51197800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:51183000-51209600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:51183400-51206800	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:51188800-51210600	Weak transcription	Brain Anterior Caudate	brain
6	chr3:51189600-51206800	Weak transcription	Fetal Brain Female	brain
7	chr3:51190400-51205800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:51190800-51203200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:51192600-51208800	Weak transcription	Brain Germinal Matrix	brain
10	chr3:51193200-51209800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:51193600-51209800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr3:51195200-51210000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr3:51195800-51197800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:51196000-51207400	Weak transcription	Fetal Brain Male	brain
15	chr3:51196000-51209800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr3:51196200-51197800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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