Variant report

Variant	rs9879725
Chromosome Location	chr3:51009435-51009436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:50653145..50653910-chr3:51008876..51009480,2	MCF-7	breast:
2	chr3:50712592..50713370-chr3:51008912..51009511,3	MCF-7	breast:
3	chr3:51008918..51009575-chr3:51137618..51138247,3	MCF-7	breast:
4	chr3:51008599..51009587-chr3:51348291..51349166,3	MCF-7	breast:
5	chr3:51004752..51006712-chr3:51007570..51009531,2	K562	blood:
6	chr3:51008595..51009448-chr3:51119304..51120395,7	MCF-7	breast:
7	chr3:51008779..51009534-chr3:51409019..51409634,2	MCF-7	breast:
8	chr3:51008595..51009447-chr3:51137461..51138173,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11716837	1.00[CEU][hapmap];0.84[TSI][hapmap]
rs9833750	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9869826	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1004881	chr3:50900793-51032918	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536568	chr3:50900793-51032918	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51008800-51009600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:51008800-51009600	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr3:51008800-51009600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:51008800-51009600	Enhancers	Liver	Liver
5	chr3:51008800-51009800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr3:51008800-51009800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr3:51008800-51009800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr3:51008800-51009800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr3:51008800-51009800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr3:51008800-51009800	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr3:51008800-51010000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:51008800-51010200	Enhancers	Primary T cells fromperipheralblood	blood
13	chr3:51008800-51010200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr3:51009200-51009600	Enhancers	Primary T cells from cord blood	blood
15	chr3:51009200-51009800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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