Variant report

Variant	rs9834433
Chromosome Location	chr3:89224260-89224261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:89223473..89225320-chr3:89226807..89228662,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12629427	0.80[EUR][1000 genomes]
rs12637863	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13315867	0.84[CEU][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13326166	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4425279	0.93[CEU][hapmap]
rs59012690	0.85[EUR][1000 genomes]
rs6551393	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6551394	0.80[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6551396	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6551400	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6551401	0.93[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6768846	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6802483	0.93[CEU][hapmap];0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72919895	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72921746	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7374085	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7433757	0.93[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7611735	0.86[CEU][hapmap];0.91[CHB][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7612982	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7630371	0.81[CEU][hapmap];0.84[CHB][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7631328	0.86[CEU][hapmap];0.84[CHB][hapmap];0.80[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7640128	0.93[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap]
rs7641811	0.86[CEU][hapmap];0.84[CHB][hapmap];0.80[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7647240	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs9810366	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9815025	0.86[CEU][hapmap];0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9821502	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9832319	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9834174	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9838527	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9842523	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9843199	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9848187	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9854754	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9860797	0.81[CEU][hapmap];0.84[CHB][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9868838	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9878894	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9883005	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9883387	0.84[CEU][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9883681	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997874	chr3:89188275-89279573	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1008916	chr3:89206065-89241915	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89221200-89224400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:89221600-89228600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:89221600-89233400	Weak transcription	Gastric	stomach
4	chr3:89221800-89226200	Weak transcription	Fetal Brain Male	brain
5	chr3:89221800-89228600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:89221800-89228800	Weak transcription	Brain Angular Gyrus	brain
7	chr3:89222000-89226400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:89222000-89228400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:89222000-89228400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:89222400-89224600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:89222400-89228400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:89222600-89233600	Weak transcription	Brain Germinal Matrix	brain
13	chr3:89222800-89226800	Weak transcription	Fetal Brain Female	brain
14	chr3:89223400-89224400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:89223400-89228600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:89223600-89228400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:89223600-89228600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr3:89223800-89228600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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