Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11128071	0.85[YRI][hapmap]
rs11128072	0.84[LWK][hapmap]
rs1512912	0.85[LWK][hapmap]
rs2063589	0.82[CHB][hapmap]
rs4449340	0.87[LWK][hapmap]
rs6551401	0.93[CEU][hapmap];0.81[CHB][hapmap];0.83[YRI][hapmap]
rs6802483	0.86[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];0.85[TSI][hapmap]
rs6803870	0.94[CHD][hapmap]
rs7433757	0.84[ASW][hapmap];0.85[CEU][hapmap];0.82[CHB][hapmap];0.84[YRI][hapmap]
rs7611735	0.82[CHB][hapmap];0.85[TSI][hapmap]
rs7630371	0.82[CHB][hapmap];0.89[YRI][hapmap]
rs7631328	0.82[CHB][hapmap]
rs7639401	0.84[YRI][hapmap]
rs7640128	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7641811	0.82[CHB][hapmap]
rs7647240	0.84[ASW][hapmap];0.93[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];0.88[TSI][hapmap]
rs9310117	0.85[LWK][hapmap];0.90[YRI][hapmap]
rs9809011	0.90[YRI][hapmap]
rs9810366	0.93[CEU][hapmap];0.81[CHB][hapmap]
rs9815025	0.84[ASW][hapmap];0.82[CHB][hapmap];0.84[LWK][hapmap];0.89[MKK][hapmap];0.85[TSI][hapmap];0.89[YRI][hapmap]
rs9832319	0.93[CEU][hapmap];0.82[CHB][hapmap]
rs9834433	0.93[CEU][hapmap]
rs9860797	0.82[CHB][hapmap];0.89[YRI][hapmap]
rs9878894	0.93[CEU][hapmap];0.82[CHB][hapmap]
rs9883681	0.93[CEU][hapmap];0.88[CHB][hapmap];0.89[YRI][hapmap]
rs994129	0.93[LWK][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv590921	chr3:89294149-89392778	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590922	chr3:89314862-89417064	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4425279	ARFGAP2	trans	parietal	SCAN
rs4425279	EPHA3	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

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