Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10779990	0.90[JPT][hapmap]
rs11128069	0.91[JPT][hapmap]
rs11128071	0.81[YRI][hapmap]
rs12629427	0.84[AFR][1000 genomes]
rs12633482	0.90[JPT][hapmap]
rs12714732	0.90[JPT][hapmap]
rs3923215	0.95[JPT][hapmap]
rs4425279	0.84[YRI][hapmap]
rs6551393	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6551394	0.82[AMR][1000 genomes]
rs6551401	0.89[YRI][hapmap]
rs72919895	0.82[AFR][1000 genomes]
rs7428598	0.90[JPT][hapmap]
rs7429534	0.90[JPT][hapmap]
rs7433757	0.89[YRI][hapmap]
rs7630371	0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7641811	0.81[YRI][hapmap]
rs9815025	0.94[YRI][hapmap]
rs9835094	0.91[JPT][hapmap]
rs9842523	0.82[AFR][1000 genomes]
rs9860797	0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9868686	0.95[JPT][hapmap]
rs9883199	0.91[JPT][hapmap]
rs9883681	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877159	chr3:89018866-89207222	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv998460	chr3:89064073-89188335	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv536638	chr3:89064073-89188335	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89164200-89166000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:89164200-89168800	Weak transcription	Brain Substantia Nigra	brain
3	chr3:89164400-89166400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:89164400-89169000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:89164600-89165600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:89164600-89166000	Enhancers	Fetal Brain Male	brain
7	chr3:89165000-89169000	Weak transcription	Brain Germinal Matrix	brain
8	chr3:89165000-89173200	Weak transcription	Fetal Brain Female	brain

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