Variant report

Variant	rs11128071
Chromosome Location	chr3:89265005-89265006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1040017	0.86[CHB][hapmap]
rs11128072	0.86[CHB][hapmap]
rs11720651	0.93[JPT][hapmap]
rs13083092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1512910	0.86[CHB][hapmap]
rs1512912	0.86[CHB][hapmap]
rs1567732	0.81[CHB][hapmap]
rs4132275	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.82[YRI][hapmap]
rs4425279	0.85[YRI][hapmap]
rs4449340	0.85[CHB][hapmap]
rs6551401	0.80[YRI][hapmap]
rs6551407	0.93[JPT][hapmap]
rs6551409	0.86[CHB][hapmap]
rs6771336	0.84[AFR][1000 genomes]
rs6779902	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67860850	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6793727	0.96[CEU][hapmap];0.82[YRI][hapmap]
rs7428532	0.81[ASN][1000 genomes]
rs7432113	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7432948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7433757	0.84[YRI][hapmap]
rs7609645	0.91[JPT][hapmap]
rs7612746	0.96[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap]
rs7630371	0.86[YRI][hapmap]
rs7639401	0.81[YRI][hapmap]
rs7646842	0.96[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.82[YRI][hapmap]
rs9310117	0.90[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9809011	0.95[YRI][hapmap]
rs9809046	0.81[ASN][1000 genomes]
rs9815025	0.85[YRI][hapmap]
rs9817310	0.90[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.81[ASN][1000 genomes]
rs9826158	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9837346	0.81[ASN][1000 genomes]
rs9860797	0.86[YRI][hapmap]
rs9866945	0.86[CHB][hapmap]
rs9873281	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9883681	0.86[YRI][hapmap]
rs994129	0.86[CHB][hapmap];0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997874	chr3:89188275-89279573	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2757001	chr3:89260495-89271087	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2759160	chr3:89260495-89271087	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89259800-89266200	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:89259800-89266600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:89260400-89265800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:89262400-89265800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:89263600-89265600	Weak transcription	Fetal Stomach	stomach
6	chr3:89263600-89265800	Weak transcription	Fetal Brain Female	brain
7	chr3:89263600-89277000	Weak transcription	Brain Germinal Matrix	brain
8	chr3:89264000-89265200	Weak transcription	Fetal Lung	lung
9	chr3:89264800-89265600	Enhancers	Fetal Brain Male	brain
10	chr3:89265000-89266600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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