Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11923402	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1317295	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1317658	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13316383	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28615303	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4507229	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4682400	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55947719	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56008438	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56294743	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62278765	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62278768	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62278769	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62278770	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62278771	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62278843	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6766013	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6795820	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9810421	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9816969	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9818407	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9829698	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9843666	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9853669	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9837134	C6orf106	trans	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112041400-112050600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:112041400-112050800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:112044800-112050600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:112046600-112050600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr3:112046600-112050800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:112046600-112051400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:112046600-112051600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:112046800-112050200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:112046800-112051400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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