Variant report

Variant	rs9837710
Chromosome Location	chr3:119546135-119546136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119538908..119542311-chr3:119543644..119546581,3	K562	blood:
2	chr3:119542022..119546217-chr3:119548294..119552137,4	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs12330290	0.88[AFR][1000 genomes]
rs12330358	1.00[AFR][1000 genomes]
rs12330670	1.00[AFR][1000 genomes]
rs13315412	0.92[AFR][1000 genomes]
rs13316265	0.85[AFR][1000 genomes]
rs13319151	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs13319559	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs13319825	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs13323804	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs28366921	0.92[AFR][1000 genomes]
rs28481299	1.00[AFR][1000 genomes]
rs28540006	1.00[AFR][1000 genomes]
rs28709836	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs28817295	0.92[AFR][1000 genomes]
rs6769820	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6772172	0.87[YRI][hapmap];0.92[AFR][1000 genomes]
rs6778773	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs6796719	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs7639665	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs7639675	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs9289137	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs9810851	0.92[AFR][1000 genomes]
rs9816765	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs9819836	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9825770	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs9826355	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs9831646	1.00[YRI][hapmap]
rs9835672	0.92[AFR][1000 genomes]
rs9836177	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs9841959	0.92[AFR][1000 genomes]
rs9843873	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9852118	0.92[AFR][1000 genomes]
rs9852797	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9854117	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs9857139	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs9857548	0.92[AFR][1000 genomes]
rs9858471	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs9861481	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs9864153	0.92[AFR][1000 genomes]
rs9864678	0.83[AFR][1000 genomes]
rs9869296	1.00[YRI][hapmap]
rs9871701	0.92[AFR][1000 genomes]
rs9871925	0.92[AFR][1000 genomes]
rs9872693	0.92[AFR][1000 genomes]
rs9874110	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9880833	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs9881985	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs9990259	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119529400-119566600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:119529600-119582000	Weak transcription	Spleen	Spleen
3	chr3:119532400-119551000	Weak transcription	Right Ventricle	heart
4	chr3:119534800-119558600	Weak transcription	Colonic Mucosa	Colon
5	chr3:119536200-119569000	Weak transcription	Esophagus	oesophagus
6	chr3:119536400-119570200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:119536600-119576000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:119536600-119576400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:119537000-119548200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:119537200-119550600	Weak transcription	Fetal Heart	heart
11	chr3:119538600-119550800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:119539000-119550800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:119539000-119576400	Weak transcription	Ovary	ovary
14	chr3:119540400-119547600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:119540400-119563600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr3:119540400-119574800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr3:119540400-119576600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:119540600-119548000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:119540800-119546600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr3:119540800-119547200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr3:119540800-119577000	Weak transcription	Aorta	Aorta
22	chr3:119541000-119548200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr3:119541000-119581600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr3:119541200-119561800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr3:119541200-119587000	Weak transcription	Gastric	stomach
26	chr3:119541800-119559200	Weak transcription	Pancreas	Pancrea
27	chr3:119541800-119560000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr3:119542200-119548400	Weak transcription	Colon Smooth Muscle	Colon
29	chr3:119542200-119550600	Weak transcription	NH-A	brain
30	chr3:119542400-119581200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr3:119542600-119548000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:119542600-119560800	Weak transcription	Hela-S3	cervix
33	chr3:119542600-119581600	Weak transcription	HUVEC	blood vessel
34	chr3:119542800-119575000	Weak transcription	Fetal Kidney	kidney
35	chr3:119543200-119546200	Strong transcription	Fetal Thymus	thymus
36	chr3:119543200-119546400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:119543200-119546400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr3:119543200-119546400	Strong transcription	Dnd41	blood
39	chr3:119543200-119546400	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr3:119543200-119548800	Weak transcription	Fetal Brain Male	brain
41	chr3:119543400-119546200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr3:119543400-119546200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr3:119543400-119546400	Strong transcription	Primary B cells from cord blood	blood
44	chr3:119543400-119546400	Weak transcription	Fetal Brain Female	brain
45	chr3:119543400-119546400	Strong transcription	NHEK	skin
46	chr3:119543400-119548600	Strong transcription	Primary T cells from cord blood	blood
47	chr3:119543400-119549000	Weak transcription	Brain Substantia Nigra	brain
48	chr3:119543600-119546200	Strong transcription	Placenta	Placenta
49	chr3:119543600-119546400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr3:119543800-119548000	Weak transcription	Stomach Mucosa	stomach

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