Variant report
| Variant | rs9839739 |
|---|---|
| Chromosome Location | chr3:88522360-88522361 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:88520234..88522396-chr3:88537772..88539509,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs13434054 | 1.00[AFR][1000 genomes] |
| rs28361953 | 1.00[AFR][1000 genomes] |
| rs28369454 | 1.00[AFR][1000 genomes] |
| rs28410049 | 1.00[AFR][1000 genomes] |
| rs28489798 | 1.00[AFR][1000 genomes] |
| rs28526730 | 0.90[AFR][1000 genomes] |
| rs28561510 | 1.00[AFR][1000 genomes] |
| rs28582327 | 1.00[AFR][1000 genomes] |
| rs28622063 | 1.00[AFR][1000 genomes] |
| rs28730440 | 1.00[AFR][1000 genomes] |
| rs28870727 | 1.00[AFR][1000 genomes] |
| rs9310084 | 1.00[AFR][1000 genomes] |
| rs9811219 | 1.00[AFR][1000 genomes] |
| rs9811696 | 1.00[AFR][1000 genomes] |
| rs9817832 | 1.00[AFR][1000 genomes] |
| rs9818014 | 1.00[AFR][1000 genomes] |
| rs9828184 | 1.00[AFR][1000 genomes] |
| rs9829167 | 1.00[AFR][1000 genomes] |
| rs9855827 | 1.00[AFR][1000 genomes] |
| rs9856124 | 1.00[AFR][1000 genomes] |
| rs9866614 | 1.00[AFR][1000 genomes] |
| rs9871259 | 1.00[AFR][1000 genomes] |
| rs9875431 | 1.00[AFR][1000 genomes] |
| rs9883389 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916330 | chr3:88083580-88884125 | Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv877148 | chr3:88334311-88541582 | Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv877149 | chr3:88372336-88541582 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv877152 | chr3:88402920-88541582 | Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv877153 | chr3:88417316-88541582 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 6 | nsv877154 | chr3:88437886-88583829 | Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv877155 | chr3:88462605-88541582 | Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:88519200-88527600 | Weak transcription | Fetal Brain Male | brain |
