Variant report

Variant	rs9875431
Chromosome Location	chr3:88490482-88490483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13434054	1.00[AFR][1000 genomes]
rs28361953	1.00[AFR][1000 genomes]
rs28369454	1.00[AFR][1000 genomes]
rs28410049	1.00[AFR][1000 genomes]
rs28489798	1.00[AFR][1000 genomes]
rs28526730	0.90[AFR][1000 genomes]
rs28561510	1.00[AFR][1000 genomes]
rs28582327	1.00[AFR][1000 genomes]
rs28622063	1.00[AFR][1000 genomes]
rs28730440	1.00[AFR][1000 genomes]
rs28870727	1.00[AFR][1000 genomes]
rs9310084	1.00[AFR][1000 genomes]
rs9811219	1.00[AFR][1000 genomes]
rs9811696	1.00[AFR][1000 genomes]
rs9817832	1.00[AFR][1000 genomes]
rs9818014	1.00[AFR][1000 genomes]
rs9828184	1.00[AFR][1000 genomes]
rs9829167	1.00[AFR][1000 genomes]
rs9839739	1.00[AFR][1000 genomes]
rs9855827	1.00[AFR][1000 genomes]
rs9856124	1.00[AFR][1000 genomes]
rs9866614	1.00[AFR][1000 genomes]
rs9871259	1.00[AFR][1000 genomes]
rs9883389	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv877148	chr3:88334311-88541582	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv877149	chr3:88372336-88541582	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv877151	chr3:88402920-88498034	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv877152	chr3:88402920-88541582	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv999198	chr3:88410579-88491242	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv877153	chr3:88417316-88541582	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv877154	chr3:88437886-88583829	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv877155	chr3:88462605-88541582	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88489400-88490600	Enhancers	Primary B cells from peripheral blood	blood
2	chr3:88489800-88490800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:88490400-88491000	Enhancers	Primary B cells from cord blood	blood

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