Variant report

Variant	rs9841926
Chromosome Location	chr3:42688733-42688734
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:42641582..42643229-chr3:42686080..42688830,2	K562	blood:
2	chr3:42671852..42674989-chr3:42686737..42692314,6	K562	blood:
3	chr3:42688509..42691154-chr3:42691239..42693774,3	MCF-7	breast:
4	chr3:42688256..42690363-chr3:42691600..42693510,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000093183	Chromatin interaction
ENSG00000114857	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10154957	1.00[AMR][1000 genomes]
rs13320598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13325536	1.00[AMR][1000 genomes]
rs28508060	1.00[AMR][1000 genomes]
rs28549046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs580447	1.00[AMR][1000 genomes]
rs58273990	1.00[AMR][1000 genomes]
rs9812538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9812673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9822273	1.00[AMR][1000 genomes]
rs9832720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9853946	1.00[AMR][1000 genomes]
rs9855071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9869491	1.00[AMR][1000 genomes]
rs9876937	1.00[AMR][1000 genomes]
rs9884030	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9985232	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002944	chr3:42559762-42728909	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42651200-42693000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:42658200-42693000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:42658400-42691400	Strong transcription	Dnd41	blood
4	chr3:42668400-42692800	Strong transcription	Fetal Muscle Trunk	muscle
5	chr3:42668800-42689200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:42668800-42690200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:42669000-42690600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:42669200-42691800	Strong transcription	Fetal Intestine Large	intestine
9	chr3:42669200-42692200	Strong transcription	Liver	Liver
10	chr3:42669400-42690600	Strong transcription	K562	blood
11	chr3:42669400-42691600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:42669400-42692200	Strong transcription	Fetal Muscle Leg	muscle
13	chr3:42669600-42690000	Strong transcription	Primary B cells from peripheral blood	blood
14	chr3:42669600-42691000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:42671000-42690800	Strong transcription	Placenta	Placenta
16	chr3:42671200-42690800	Strong transcription	NHDF-Ad	bronchial
17	chr3:42671200-42691400	Strong transcription	HSMM	muscle
18	chr3:42671200-42691600	Strong transcription	NH-A	brain
19	chr3:42671400-42689800	Strong transcription	Primary B cells from cord blood	blood
20	chr3:42671400-42690600	Strong transcription	Fetal Lung	lung
21	chr3:42671400-42692200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:42671400-42692200	Strong transcription	Adipose Nuclei	Adipose
23	chr3:42672000-42689000	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr3:42672000-42689400	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr3:42672000-42690600	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr3:42672000-42691800	Strong transcription	Stomach Smooth Muscle	stomach
27	chr3:42672200-42689000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:42672600-42692200	Strong transcription	Fetal Brain Female	brain
29	chr3:42673200-42689000	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr3:42673200-42692600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:42673400-42688800	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr3:42673600-42689400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:42673600-42690400	Strong transcription	NHLF	lung
34	chr3:42673800-42688800	Strong transcription	H9 Cell Line	embryonic stem cell
35	chr3:42674000-42688800	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr3:42674800-42692200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:42676600-42690000	Strong transcription	HepG2	liver
38	chr3:42676800-42690200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr3:42677000-42692800	Strong transcription	Fetal Stomach	stomach
40	chr3:42677600-42692600	Strong transcription	Primary hematopoietic stem cells	blood
41	chr3:42680200-42689400	Strong transcription	Osteobl	bone
42	chr3:42680200-42690600	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr3:42680600-42689000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr3:42680600-42692400	Strong transcription	Fetal Intestine Small	intestine
45	chr3:42680800-42689200	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr3:42680800-42692200	Weak transcription	Right Atrium	heart
47	chr3:42681000-42690600	Strong transcription	Duodenum Mucosa	Duodenum
48	chr3:42681000-42690600	Strong transcription	GM12878-XiMat	blood
49	chr3:42681200-42691000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr3:42681400-42691400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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