Variant report

Variant	rs9832720
Chromosome Location	chr3:42654132-42654133
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10154957	1.00[AMR][1000 genomes]
rs13320598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13325536	1.00[AMR][1000 genomes]
rs28508060	1.00[AMR][1000 genomes]
rs28549046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs580447	1.00[AMR][1000 genomes]
rs58273990	1.00[AMR][1000 genomes]
rs9812538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9812673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9822273	1.00[AMR][1000 genomes]
rs9841926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9853946	1.00[AMR][1000 genomes]
rs9855071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9869491	1.00[AMR][1000 genomes]
rs9876937	1.00[AMR][1000 genomes]
rs9884030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9985232	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002944	chr3:42559762-42728909	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv876730	chr3:42643935-42667936	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42643200-42672800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:42643600-42675000	Weak transcription	Aorta	Aorta
3	chr3:42643800-42671200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:42644000-42660000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:42644000-42671000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:42644000-42671200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:42644000-42671400	Weak transcription	HSMMtube	muscle
8	chr3:42644000-42672000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:42644200-42655200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr3:42644200-42663200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:42644200-42672400	Weak transcription	Fetal Kidney	kidney
12	chr3:42644800-42660000	Weak transcription	Colonic Mucosa	Colon
13	chr3:42644800-42660200	Weak transcription	NH-A	brain
14	chr3:42645200-42660200	Weak transcription	HMEC	breast
15	chr3:42646000-42672000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:42647000-42671400	Weak transcription	NHEK	skin
17	chr3:42647200-42668600	Weak transcription	Brain Germinal Matrix	brain
18	chr3:42647200-42688200	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr3:42647400-42654600	Weak transcription	Right Ventricle	heart
20	chr3:42647400-42672000	Weak transcription	NHLF	lung
21	chr3:42647600-42654600	Weak transcription	A549	lung
22	chr3:42647600-42672000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:42647600-42677600	Weak transcription	Gastric	stomach
24	chr3:42648200-42655400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr3:42648800-42672600	Weak transcription	Fetal Brain Female	brain
26	chr3:42649000-42657600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:42649400-42657000	Weak transcription	Primary B cells from cord blood	blood
28	chr3:42649800-42654400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr3:42649800-42671200	Weak transcription	Fetal Brain Male	brain
30	chr3:42650200-42660000	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr3:42650400-42654600	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr3:42650400-42654600	Enhancers	Primary T cells from cord blood	blood
33	chr3:42650400-42654600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr3:42650400-42654600	Weak transcription	Brain Substantia Nigra	brain
35	chr3:42650400-42657400	Weak transcription	Osteobl	bone
36	chr3:42650400-42658600	Weak transcription	HSMM	muscle
37	chr3:42650400-42659800	Weak transcription	Fetal Thymus	thymus
38	chr3:42650400-42660000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr3:42650400-42660000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr3:42650400-42660200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr3:42650400-42660600	Weak transcription	Fetal Heart	heart
42	chr3:42650400-42671400	Weak transcription	Thymus	Thymus
43	chr3:42650400-42671800	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr3:42650400-42672000	Weak transcription	Stomach Smooth Muscle	stomach
45	chr3:42650600-42657000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr3:42650600-42657000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr3:42650600-42657400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr3:42650600-42658200	Weak transcription	Psoas Muscle	Psoas
49	chr3:42650600-42658200	Weak transcription	Right Atrium	heart
50	chr3:42650600-42660000	Weak transcription	Fetal Lung	lung

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