Variant report

Variant	rs9842049
Chromosome Location	chr3:155569040-155569041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:155563365..155564979-chr3:155565910..155569268,3	K562	blood:
2	chr3:155568718..155574348-chr3:155586235..155593210,15	K562	blood:
3	chr3:155564204..155569110-chr3:155569153..155573660,11	K562	blood:
4	chr3:155567795..155569720-chr3:155570754..155573667,3	MCF-7	breast:
5	chr3:155522731..155527439-chr3:155568712..155573851,7	MCF-7	breast:
6	chr3:155531751..155534716-chr3:155568140..155570659,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163655	Chromatin interaction
ENSG00000174928	Chromatin interaction
ENSG00000169359	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11915601	1.00[EUR][1000 genomes]
rs11927594	1.00[EUR][1000 genomes]
rs16825395	1.00[EUR][1000 genomes]
rs1991546	1.00[EUR][1000 genomes]
rs4621291	1.00[EUR][1000 genomes]
rs6441016	0.92[AFR][1000 genomes]
rs6762067	1.00[EUR][1000 genomes]
rs6790239	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6790610	1.00[EUR][1000 genomes]
rs6792780	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6808062	1.00[EUR][1000 genomes]
rs7616623	0.92[AFR][1000 genomes]
rs7617114	1.00[EUR][1000 genomes]
rs7617813	1.00[EUR][1000 genomes]
rs7637292	1.00[EUR][1000 genomes]
rs7640763	1.00[EUR][1000 genomes]
rs9814868	0.83[AFR][1000 genomes]
rs9844793	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9869777	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155524400-155569400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:155530600-155569800	Weak transcription	Aorta	Aorta
3	chr3:155533400-155569400	Weak transcription	Brain Substantia Nigra	brain
4	chr3:155540000-155569400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:155542800-155569600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:155543000-155569400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:155543000-155569400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:155543000-155569400	Weak transcription	NHLF	lung
9	chr3:155543000-155570200	Weak transcription	Esophagus	oesophagus
10	chr3:155543200-155569400	Weak transcription	A549	lung
11	chr3:155547800-155569400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:155547800-155569600	Weak transcription	HSMMtube	muscle
13	chr3:155551800-155569600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr3:155552000-155569400	Weak transcription	HSMM	muscle
15	chr3:155552000-155569600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:155557600-155569800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:155560600-155569600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:155561600-155569600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr3:155562200-155570400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr3:155562600-155569400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr3:155562800-155569400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:155563000-155570400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr3:155564200-155569600	Weak transcription	Brain Anterior Caudate	brain
24	chr3:155565600-155569400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr3:155565600-155569600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr3:155566000-155570200	Enhancers	Small Intestine	intestine
27	chr3:155566200-155569200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr3:155566200-155569400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr3:155566200-155569400	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr3:155566400-155569600	Enhancers	Adipose Nuclei	Adipose
31	chr3:155566400-155570200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:155566600-155569600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr3:155567200-155569400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr3:155567400-155569400	Enhancers	Ovary	ovary
35	chr3:155567400-155569600	Enhancers	Lung	lung
36	chr3:155567400-155569600	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr3:155567400-155570200	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr3:155567400-155570200	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr3:155567600-155569400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr3:155567600-155569600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr3:155567600-155569600	Weak transcription	Spleen	Spleen
42	chr3:155567800-155569400	Enhancers	Right Atrium	heart
43	chr3:155567800-155569800	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr3:155568000-155569200	Genic enhancers	Fetal Stomach	stomach
45	chr3:155568000-155569400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr3:155568000-155569400	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr3:155568000-155569400	Genic enhancers	Fetal Thymus	thymus
48	chr3:155568000-155569400	Enhancers	HUVEC	blood vessel
49	chr3:155568000-155569600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr3:155568000-155569600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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