Variant report

Variant	rs9869777
Chromosome Location	chr3:155553763-155553764
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11915601	1.00[EUR][1000 genomes]
rs11927594	1.00[EUR][1000 genomes]
rs16825395	1.00[EUR][1000 genomes]
rs1991546	1.00[EUR][1000 genomes]
rs4621291	1.00[EUR][1000 genomes]
rs6441016	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6762067	1.00[EUR][1000 genomes]
rs6790239	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6790610	1.00[EUR][1000 genomes]
rs6792780	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6808062	1.00[EUR][1000 genomes]
rs7616623	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7617114	1.00[EUR][1000 genomes]
rs7617813	1.00[EUR][1000 genomes]
rs7637292	1.00[EUR][1000 genomes]
rs7640763	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814868	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9842049	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9844793	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9876902	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155524400-155565800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr3:155524400-155567400	Weak transcription	Lung	lung
3	chr3:155524400-155569400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:155524600-155563400	Weak transcription	Brain Angular Gyrus	brain
5	chr3:155524600-155568000	Weak transcription	HUVEC	blood vessel
6	chr3:155530600-155569800	Weak transcription	Aorta	Aorta
7	chr3:155533200-155561800	Weak transcription	Gastric	stomach
8	chr3:155533400-155565800	Weak transcription	HepG2	liver
9	chr3:155533400-155569400	Weak transcription	Brain Substantia Nigra	brain
10	chr3:155535000-155568000	Weak transcription	Right Ventricle	heart
11	chr3:155535400-155568800	Weak transcription	Osteobl	bone
12	chr3:155535600-155568000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr3:155536800-155568200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:155537200-155565600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr3:155537400-155564000	Weak transcription	Fetal Brain Female	brain
16	chr3:155538600-155558800	Weak transcription	Pancreas	Pancrea
17	chr3:155539200-155555400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr3:155540000-155569400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:155540200-155568000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:155541000-155568000	Weak transcription	Psoas Muscle	Psoas
21	chr3:155541200-155567400	Weak transcription	Ovary	ovary
22	chr3:155541600-155567800	Weak transcription	Colonic Mucosa	Colon
23	chr3:155541800-155565800	Weak transcription	NHDF-Ad	bronchial
24	chr3:155541800-155566000	Weak transcription	Small Intestine	intestine
25	chr3:155542800-155560800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr3:155542800-155569600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr3:155543000-155566000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:155543000-155569400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr3:155543000-155569400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr3:155543000-155569400	Weak transcription	NHLF	lung
31	chr3:155543000-155570200	Weak transcription	Esophagus	oesophagus
32	chr3:155543200-155562400	Weak transcription	Left Ventricle	heart
33	chr3:155543200-155569400	Weak transcription	A549	lung
34	chr3:155544200-155569000	Weak transcription	Brain Hippocampus Middle	brain
35	chr3:155544800-155565800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr3:155545000-155561600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr3:155545600-155563000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr3:155545600-155567200	Weak transcription	Colon Smooth Muscle	Colon
39	chr3:155545600-155568000	Weak transcription	Fetal Kidney	kidney
40	chr3:155545800-155554600	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr3:155546400-155561600	Weak transcription	Fetal Heart	heart
42	chr3:155547400-155563200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr3:155547600-155554200	Weak transcription	GM12878-XiMat	blood
44	chr3:155547600-155558000	Weak transcription	Fetal Muscle Trunk	muscle
45	chr3:155547600-155558400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr3:155547600-155558800	Weak transcription	Fetal Muscle Leg	muscle
47	chr3:155547600-155565800	Weak transcription	Thymus	Thymus
48	chr3:155547600-155567200	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr3:155547800-155554400	Weak transcription	HMEC	breast
50	chr3:155547800-155561400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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