Variant report

Variant	rs9842761
Chromosome Location	chr3:69194345-69194346
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1995663	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1995664	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2872690	0.88[GIH][hapmap]
rs4635707	0.81[ASW][hapmap];0.88[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];0.87[MKK][hapmap];0.93[ASN][1000 genomes]
rs7610262	0.85[GIH][hapmap]
rs7638995	0.90[JPT][hapmap];0.81[LWK][hapmap];0.84[MKK][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9842761	LMOD3	cis	Esophagus Muscularis	GTEx
rs9842761	LMOD3	cis	Artery Tibial	GTEx

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69191400-69195000	Enhancers	K562	blood
2	chr3:69192800-69194400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:69193000-69194400	Enhancers	Fetal Muscle Leg	muscle
4	chr3:69193200-69194600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
5	chr3:69193400-69194600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
6	chr3:69193400-69195200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:69193400-69195200	Enhancers	Placenta	Placenta
8	chr3:69193600-69194400	Enhancers	Psoas Muscle	Psoas
9	chr3:69193600-69194600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
10	chr3:69193600-69195200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr3:69193800-69194400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:69193800-69194400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
13	chr3:69193800-69194400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:69193800-69194600	Enhancers	Primary hematopoietic stem cells	blood
15	chr3:69193800-69194600	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr3:69193800-69194600	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr3:69193800-69194600	Enhancers	Fetal Thymus	thymus
18	chr3:69193800-69194600	Enhancers	Dnd41	blood
19	chr3:69193800-69194800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr3:69193800-69195000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
21	chr3:69193800-69195000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr3:69193800-69195000	Enhancers	Brain Substantia Nigra	brain
23	chr3:69193800-69195200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:69194000-69194400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr3:69194000-69194400	Enhancers	Brain Anterior Caudate	brain
26	chr3:69194000-69195000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:69194000-69195200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:69194200-69194400	Enhancers	HSMMtube	muscle
29	chr3:69194200-69194600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr3:69194200-69198800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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