Variant report

Variant	rs9843446
Chromosome Location	chr3:45893243-45893244
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2191032	1.00[EUR][1000 genomes]
rs2673059	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2742361	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2742362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4683142	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4683144	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4683145	0.92[EUR][1000 genomes]
rs9856760	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45890000-45893400	Weak transcription	Primary T cells from cord blood	blood
2	chr3:45890000-45907400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:45891800-45905200	Weak transcription	Psoas Muscle	Psoas
4	chr3:45892600-45893600	Weak transcription	Thymus	Thymus
5	chr3:45892600-45893800	Weak transcription	Spleen	Spleen
6	chr3:45892600-45894600	Strong transcription	Dnd41	blood
7	chr3:45892800-45893400	Weak transcription	Fetal Thymus	thymus
8	chr3:45893000-45895800	Enhancers	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links