Variant report

Variant	rs9856760
Chromosome Location	chr3:45906356-45906357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1029732	0.84[AFR][1000 genomes]
rs12721497	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17078346	0.86[ASN][1000 genomes]
rs17078348	0.86[ASN][1000 genomes]
rs17078401	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2191032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2673059	0.88[EUR][1000 genomes]
rs2742361	0.96[EUR][1000 genomes]
rs2742362	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs4683142	0.88[EUR][1000 genomes]
rs4683144	0.88[EUR][1000 genomes]
rs4683145	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7614952	0.84[YRI][hapmap];0.81[AFR][1000 genomes]
rs9843446	0.98[EUR][1000 genomes]
rs9843503	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45890000-45907400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:45902600-45910200	Weak transcription	Gastric	stomach
3	chr3:45902800-45906400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:45905400-45906400	Enhancers	GM12878-XiMat	blood
5	chr3:45905400-45911000	Weak transcription	Esophagus	oesophagus
6	chr3:45906000-45906600	Enhancers	Primary T cells from cord blood	blood
7	chr3:45906000-45907400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr3:45906200-45906600	Transcr. at gene 5' and 3'	Dnd41	blood
9	chr3:45906200-45906800	Flanking Active TSS	Fetal Thymus	thymus
10	chr3:45906200-45907000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr3:45906200-45907000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
12	chr3:45906200-45907000	Flanking Active TSS	Thymus	Thymus
13	chr3:45906200-45907200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr3:45906200-45907400	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr3:45906200-45907400	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr3:45906200-45907600	Enhancers	Primary B cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links