Variant report

Variant	rs9843834
Chromosome Location	chr3:100134200-100134201
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:100119703..100124420-chr3:100130345..100135405,7	K562	blood:
2	chr3:100124785..100128926-chr3:100132004..100134239,4	K562	blood:
3	chr3:100133383..100135770-chr3:100143466..100145263,2	K562	blood:
4	chr3:100118710..100121482-chr3:100133800..100135305,2	K562	blood:
5	chr3:100125929..100131101-chr3:100131208..100137515,9	MCF-7	breast:
6	chr3:100124446..100128777-chr3:100130213..100134934,4	MCF-7	breast:
7	chr3:100126754..100128460-chr3:100131723..100134239,2	K562	blood:
8	chr3:100119110..100121719-chr3:100132035..100136496,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000154174	Chromatin interaction
ENSG00000206535	Chromatin interaction

rs_ID	r²[population]
rs10049055	1.00[AFR][1000 genomes]
rs10049208	1.00[AFR][1000 genomes]
rs28783481	1.00[AFR][1000 genomes]
rs28785809	1.00[AFR][1000 genomes]
rs7637142	0.88[AFR][1000 genomes]
rs9809742	0.94[AFR][1000 genomes]
rs9838524	1.00[AFR][1000 genomes]
rs9853573	1.00[AFR][1000 genomes]
rs9867520	0.94[AFR][1000 genomes]
rs9871870	0.94[AFR][1000 genomes]
rs9872028	0.94[AFR][1000 genomes]
rs9873900	1.00[AFR][1000 genomes]
rs9876856	0.94[AFR][1000 genomes]

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100122000-100143800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:100122600-100149200	Weak transcription	Left Ventricle	heart
3	chr3:100123200-100135400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:100124200-100143600	Weak transcription	Hela-S3	cervix
5	chr3:100126400-100143200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:100126600-100139800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:100127400-100134200	Weak transcription	Gastric	stomach
8	chr3:100127400-100139000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:100127400-100144200	Weak transcription	Pancreas	Pancrea
10	chr3:100127600-100134800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:100127600-100137800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:100127600-100146200	Weak transcription	Ovary	ovary
13	chr3:100127600-100148200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:100130200-100135400	Weak transcription	Fetal Intestine Large	intestine
15	chr3:100130600-100136000	Weak transcription	Fetal Lung	lung
16	chr3:100130600-100139000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:100130600-100142400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:100130600-100162800	Weak transcription	Fetal Brain Male	brain
19	chr3:100131000-100139000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:100131200-100143400	Weak transcription	Liver	Liver
21	chr3:100131800-100135400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr3:100132000-100135000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr3:100132000-100142800	Weak transcription	Fetal Intestine Small	intestine
24	chr3:100132000-100148200	Weak transcription	Aorta	Aorta
25	chr3:100132200-100134200	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr3:100132200-100134800	Weak transcription	HepG2	liver
27	chr3:100132200-100151600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:100132800-100139800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr3:100132800-100157800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr3:100133000-100134200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr3:100133200-100134200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr3:100133600-100134400	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr3:100134200-100134400	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr3:100134200-100134400	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr3:100134200-100134600	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links