Variant report

Variant	rs10049208
Chromosome Location	chr3:100140040-100140041
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100119647..100121267-chr3:100138212..100140634,2	MCF-7	breast:
2	chr3:100120402..100122448-chr3:100139521..100142445,2	K562	blood:

Variant related genes	Relation type
ENSG00000206535	Chromatin interaction
ENSG00000154174	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10049055	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10222473	1.00[EUR][1000 genomes]
rs13318574	1.00[EUR][1000 genomes]
rs13326259	1.00[EUR][1000 genomes]
rs16842034	0.83[EUR][1000 genomes]
rs2289508	0.86[EUR][1000 genomes]
rs28631346	0.86[EUR][1000 genomes]
rs28655373	1.00[EUR][1000 genomes]
rs28783481	1.00[AFR][1000 genomes]
rs28785809	1.00[AFR][1000 genomes]
rs41272629	0.83[EUR][1000 genomes]
rs41272631	0.83[EUR][1000 genomes]
rs41272633	0.83[EUR][1000 genomes]
rs62636640	0.83[EUR][1000 genomes]
rs62636641	0.83[EUR][1000 genomes]
rs6768684	0.83[EUR][1000 genomes]
rs72943302	0.86[EUR][1000 genomes]
rs72945203	0.86[EUR][1000 genomes]
rs73860636	1.00[EUR][1000 genomes]
rs7637142	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7652596	0.83[EUR][1000 genomes]
rs9653957	0.86[EUR][1000 genomes]
rs9809742	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9821113	0.86[EUR][1000 genomes]
rs9838524	1.00[AFR][1000 genomes]
rs9843834	1.00[AFR][1000 genomes]
rs9844356	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9853573	1.00[AFR][1000 genomes]
rs9855368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9864923	0.86[EUR][1000 genomes]
rs9867520	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9871870	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9872028	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9873900	1.00[AFR][1000 genomes]
rs9876856	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100122000-100143800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:100122600-100149200	Weak transcription	Left Ventricle	heart
3	chr3:100124200-100143600	Weak transcription	Hela-S3	cervix
4	chr3:100126400-100143200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:100127400-100144200	Weak transcription	Pancreas	Pancrea
6	chr3:100127600-100146200	Weak transcription	Ovary	ovary
7	chr3:100127600-100148200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:100130600-100142400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:100130600-100162800	Weak transcription	Fetal Brain Male	brain
10	chr3:100131200-100143400	Weak transcription	Liver	Liver
11	chr3:100132000-100142800	Weak transcription	Fetal Intestine Small	intestine
12	chr3:100132000-100148200	Weak transcription	Aorta	Aorta
13	chr3:100132200-100151600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:100132800-100157800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr3:100135000-100140400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr3:100136000-100144800	Weak transcription	HepG2	liver
17	chr3:100139200-100143200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:100139800-100140400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:100139800-100140400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr3:100140000-100140400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr3:100140000-100148000	Weak transcription	Right Atrium	heart

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