Variant report

Variant	rs16842034
Chromosome Location	chr3:99965764-99965765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10049208	0.83[EUR][1000 genomes]
rs10222473	0.83[EUR][1000 genomes]
rs13318574	0.83[EUR][1000 genomes]
rs13326259	0.83[EUR][1000 genomes]
rs16842059	0.88[LWK][hapmap];0.89[MKK][hapmap];0.82[YRI][hapmap]
rs17314245	1.00[EUR][1000 genomes]
rs17314280	1.00[EUR][1000 genomes]
rs17314977	1.00[EUR][1000 genomes]
rs17392822	1.00[EUR][1000 genomes]
rs17393080	1.00[EUR][1000 genomes]
rs2289508	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs28655373	0.83[EUR][1000 genomes]
rs41272629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41272631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41272633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62636640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62636641	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6762871	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6764049	0.87[AFR][1000 genomes]
rs6768684	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6781780	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6788807	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6790187	1.00[EUR][1000 genomes]
rs6794130	1.00[EUR][1000 genomes]
rs6794365	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6807137	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6809618	0.82[YRI][hapmap]
rs72936590	0.83[EUR][1000 genomes]
rs73860636	0.83[EUR][1000 genomes]
rs7433331	1.00[CEU][hapmap]
rs7615654	0.87[AFR][1000 genomes]
rs7637142	0.83[EUR][1000 genomes]
rs7648943	1.00[EUR][1000 genomes]
rs7652596	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs766777	1.00[EUR][1000 genomes]
rs9809742	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9844356	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9855368	0.83[EUR][1000 genomes]
rs9867520	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9871870	0.83[EUR][1000 genomes]
rs9872028	0.83[EUR][1000 genomes]
rs9876856	1.00[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1003924	chr3:99933762-100112690	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99956200-99966400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:99959800-99972400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:99963000-99965800	Enhancers	Osteobl	bone
4	chr3:99963400-99966200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:99964600-99978600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:99964800-99979000	Weak transcription	Aorta	Aorta
7	chr3:99965000-99966200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:99965000-99972800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:99965200-99967800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:99965200-99972600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:99965200-99978800	Weak transcription	NH-A	brain
12	chr3:99965400-99966200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr3:99965600-99978800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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