Variant report
| Variant | rs13326259 |
|---|---|
| Chromosome Location | chr3:100178437-100178438 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10049208 | 1.00[EUR][1000 genomes] |
| rs10222473 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10451918 | 1.00[CEU][hapmap] |
| rs1144116 | 1.00[CEU][hapmap] |
| rs1144117 | 1.00[CEU][hapmap] |
| rs1144119 | 1.00[CEU][hapmap] |
| rs13318574 | 1.00[EUR][1000 genomes] |
| rs16842034 | 0.83[EUR][1000 genomes] |
| rs2289508 | 1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs28631346 | 0.86[EUR][1000 genomes] |
| rs28655373 | 1.00[EUR][1000 genomes] |
| rs41272629 | 0.83[EUR][1000 genomes] |
| rs41272631 | 0.83[EUR][1000 genomes] |
| rs41272633 | 0.83[EUR][1000 genomes] |
| rs62636640 | 0.83[EUR][1000 genomes] |
| rs62636641 | 0.83[EUR][1000 genomes] |
| rs6768684 | 0.83[EUR][1000 genomes] |
| rs72943302 | 0.86[EUR][1000 genomes] |
| rs72945203 | 0.86[EUR][1000 genomes] |
| rs73860636 | 1.00[EUR][1000 genomes] |
| rs7433331 | 1.00[CEU][hapmap] |
| rs7637142 | 1.00[EUR][1000 genomes] |
| rs7652596 | 0.83[EUR][1000 genomes] |
| rs9653957 | 0.86[EUR][1000 genomes] |
| rs9809742 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs9817534 | 1.00[CHD][hapmap] |
| rs9817778 | 1.00[CEU][hapmap] |
| rs9821113 | 0.86[EUR][1000 genomes] |
| rs9844356 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs9855368 | 1.00[EUR][1000 genomes] |
| rs9864923 | 0.86[EUR][1000 genomes] |
| rs9867520 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs9867888 | 1.00[CEU][hapmap] |
| rs9871870 | 1.00[EUR][1000 genomes] |
| rs9872028 | 1.00[EUR][1000 genomes] |
| rs9876856 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877218 | chr3:100176360-100267619 | Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:100148200-100182400 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
| 2 | chr3:100172200-100185200 | Weak transcription | Aorta | Aorta |
| 3 | chr3:100178400-100181800 | Weak transcription | Liver | Liver |
