The 2.0 version of rSNPBase

Variant report

Variant rs9817534
Chromosome Location chr3:100239526-100239527
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:100235200-100242000 Enhancers Primary neutrophils fromperipheralblood blood
2 chr3:100235800-100244800 Weak transcription Muscle Satellite Cultured Cells --
3 chr3:100236400-100242600 Weak transcription Pancreatic Islets Pancreatic Islet
4 chr3:100237000-100240600 Weak transcription GM12878-XiMat blood
5 chr3:100237200-100240600 Enhancers Monocytes-CD14+_RO01746 blood
6 chr3:100237600-100241600 Weak transcription HepG2 liver
7 chr3:100237600-100244200 Weak transcription NH-A brain
8 chr3:100238000-100244400 Weak transcription Adipose Nuclei Adipose
9 chr3:100238000-100244400 Weak transcription Rectal Smooth Muscle rectum
10 chr3:100238000-100252600 Weak transcription Fetal Intestine Small intestine
11 chr3:100238000-100265400 Weak transcription HSMMtube muscle
12 chr3:100238200-100240400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
13 chr3:100238200-100240600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr3:100238200-100244400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr3:100238200-100244400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr3:100238200-100244400 Weak transcription HSMM muscle
17 chr3:100238400-100239600 Weak transcription Liver Liver
18 chr3:100238400-100240400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr3:100238400-100244200 Weak transcription NHDF-Ad bronchial
20 chr3:100238600-100239600 Weak transcription Primary monocytes fromperipheralblood blood
21 chr3:100238600-100239800 Weak transcription NHEK skin
22 chr3:100238800-100240400 Weak transcription Fetal Muscle Trunk muscle
23 chr3:100238800-100240400 Weak transcription K562 blood
24 chr3:100238800-100243800 Weak transcription HMEC breast
25 chr3:100239000-100239800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr3:100239000-100241000 Strong transcription Fetal Muscle Leg muscle
27 chr3:100239000-100244200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
28 chr3:100239000-100244600 Weak transcription Spleen Spleen
29 chr3:100239200-100239600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr3:100239200-100241400 Strong transcription Breast Myoepithelial Primary Cells Breast
31 chr3:100239200-100242200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr3:100239200-100243200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr3:100239200-100243200 Strong transcription Fetal Lung lung
34 chr3:100239200-100244800 Enhancers Placenta Amnion Placenta Amnion
35 chr3:100239400-100242000 Strong transcription Fetal Adrenal Gland Adrenal Gland
36 chr3:100239400-100242200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr3:100239400-100242200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
38 chr3:100239400-100242200 Strong transcription Stomach Smooth Muscle stomach
39 chr3:100239400-100242400 Strong transcription Ovary ovary
40 chr3:100239400-100245000 Strong transcription Fetal Stomach stomach
41 chr3:100239400-100245200 Strong transcription Aorta Aorta

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Last update: Aug 31, 2015