Variant report

Variant	rs59106990
Chromosome Location	chr3:100215565-100215566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100213098..100216032-chr3:100220024..100221553,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10049153	1.00[AMR][1000 genomes]
rs13318991	1.00[AMR][1000 genomes]
rs16842340	1.00[AMR][1000 genomes]
rs28377730	1.00[AMR][1000 genomes]
rs28416993	1.00[EUR][1000 genomes]
rs28830293	1.00[AMR][1000 genomes]
rs28844058	1.00[AMR][1000 genomes]
rs28860520	1.00[EUR][1000 genomes]
rs28873718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56118470	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59562996	1.00[AMR][1000 genomes]
rs6775160	1.00[AMR][1000 genomes]
rs6775560	1.00[AMR][1000 genomes]
rs72620018	1.00[AMR][1000 genomes]
rs72620019	1.00[AMR][1000 genomes]
rs72620020	1.00[AMR][1000 genomes]
rs72917813	1.00[AMR][1000 genomes]
rs72926203	1.00[AMR][1000 genomes]
rs72929300	1.00[AMR][1000 genomes]
rs72943274	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72943278	1.00[EUR][1000 genomes]
rs72943283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72945208	1.00[EUR][1000 genomes]
rs72945247	1.00[AMR][1000 genomes]
rs7624606	1.00[AMR][1000 genomes]
rs9814929	1.00[AMR][1000 genomes]
rs9817534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9817663	1.00[AMR][1000 genomes]
rs9818259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9818445	1.00[AMR][1000 genomes]
rs9830610	1.00[AMR][1000 genomes]
rs9832463	1.00[AMR][1000 genomes]
rs9837310	1.00[EUR][1000 genomes]
rs9842423	1.00[EUR][1000 genomes]
rs9850973	1.00[AMR][1000 genomes]
rs9852395	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9857046	1.00[AMR][1000 genomes]
rs9858165	1.00[AMR][1000 genomes]
rs9861741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9866409	1.00[AMR][1000 genomes]
rs9873252	1.00[AMR][1000 genomes]
rs9874116	1.00[AMR][1000 genomes]
rs9874305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9874776	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100212000-100215800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr3:100212200-100215600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr3:100212400-100215600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:100212400-100219200	Weak transcription	Aorta	Aorta
5	chr3:100212400-100222800	Weak transcription	Ovary	ovary
6	chr3:100212800-100217800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:100212800-100224800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:100213200-100216400	Weak transcription	Fetal Stomach	stomach
9	chr3:100213400-100217600	Enhancers	Placenta Amnion	Placenta Amnion
10	chr3:100213800-100216000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:100214000-100223600	Weak transcription	Fetal Lung	lung
12	chr3:100214400-100216400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:100214400-100216400	Enhancers	NHDF-Ad	bronchial
14	chr3:100214400-100217400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:100214600-100219400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:100214800-100216000	Flanking Active TSS	GM12878-XiMat	blood
17	chr3:100214800-100216200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:100214800-100216200	Enhancers	HSMM	muscle
19	chr3:100214800-100216400	Enhancers	HMEC	breast
20	chr3:100214800-100216800	Enhancers	NHEK	skin
21	chr3:100215000-100216200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:100215000-100216400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr3:100215200-100215600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:100215200-100215800	Enhancers	Osteobl	bone
25	chr3:100215200-100216200	Enhancers	HSMMtube	muscle
26	chr3:100215200-100216200	Enhancers	NHLF	lung
27	chr3:100215200-100216400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:100215200-100216400	Enhancers	NH-A	brain
29	chr3:100215400-100215600	Enhancers	Brain Anterior Caudate	brain
30	chr3:100215400-100216200	Enhancers	Primary B cells from peripheral blood	blood
31	chr3:100215400-100216200	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr3:100215400-100216200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:100215400-100216400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr3:100215400-100218600	Weak transcription	Liver	Liver

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