Variant report

Variant	rs9830610
Chromosome Location	chr3:100305100-100305101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10049153	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10451918	1.00[CEU][hapmap]
rs1144116	1.00[CEU][hapmap]
rs1144117	1.00[CEU][hapmap]
rs1144119	1.00[CEU][hapmap]
rs13316513	1.00[CEU][hapmap]
rs13318991	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13319530	1.00[CEU][hapmap]
rs13326828	1.00[CEU][hapmap]
rs16842340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16842455	0.81[EUR][1000 genomes]
rs16842458	0.81[EUR][1000 genomes]
rs16842471	0.81[EUR][1000 genomes]
rs16842472	0.81[EUR][1000 genomes]
rs16842478	0.81[EUR][1000 genomes]
rs16842705	1.00[CEU][hapmap]
rs2128225	1.00[CEU][hapmap]
rs2128226	1.00[CEU][hapmap]
rs2289508	1.00[CEU][hapmap]
rs28377730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28830293	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28844058	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28873718	1.00[AMR][1000 genomes]
rs35606932	0.81[EUR][1000 genomes]
rs41272969	0.81[EUR][1000 genomes]
rs41272973	0.81[EUR][1000 genomes]
rs41272977	0.81[EUR][1000 genomes]
rs4317136	1.00[CEU][hapmap]
rs56118470	1.00[AMR][1000 genomes]
rs59106990	1.00[AMR][1000 genomes]
rs59562996	1.00[AMR][1000 genomes]
rs6775560	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs72620018	1.00[AMR][1000 genomes]
rs72620019	1.00[AMR][1000 genomes]
rs72620020	1.00[AMR][1000 genomes]
rs72914677	1.00[EUR][1000 genomes]
rs72917813	1.00[AMR][1000 genomes]
rs72919417	0.81[EUR][1000 genomes]
rs72926203	1.00[AMR][1000 genomes]
rs72929300	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72943274	1.00[AMR][1000 genomes]
rs72943283	1.00[AMR][1000 genomes]
rs72945247	1.00[AMR][1000 genomes]
rs73143119	1.00[EUR][1000 genomes]
rs7433331	1.00[CEU][hapmap]
rs7624606	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs7628074	0.81[EUR][1000 genomes]
rs7628965	0.81[EUR][1000 genomes]
rs7637207	0.81[EUR][1000 genomes]
rs7647983	0.81[EUR][1000 genomes]
rs9290213	1.00[CEU][hapmap]
rs967308	1.00[CEU][hapmap]
rs9809520	1.00[CEU][hapmap]
rs9809742	1.00[CEU][hapmap]
rs9811997	1.00[CEU][hapmap]
rs9813730	1.00[CEU][hapmap]
rs9814929	1.00[AMR][1000 genomes]
rs9817424	1.00[CEU][hapmap]
rs9817534	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs9817663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9817778	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9818055	1.00[CEU][hapmap]
rs9818126	1.00[CEU][hapmap]
rs9818259	1.00[AMR][1000 genomes]
rs9818445	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9823506	1.00[CEU][hapmap]
rs9832463	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9834987	1.00[CEU][hapmap]
rs9840416	1.00[CEU][hapmap]
rs9842040	1.00[CEU][hapmap]
rs9850973	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9851573	1.00[CEU][hapmap]
rs9852395	1.00[AMR][1000 genomes]
rs9853591	1.00[CEU][hapmap]
rs9857046	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9858165	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9859204	1.00[CEU][hapmap]
rs9859730	1.00[CEU][hapmap]
rs9861741	1.00[AMR][1000 genomes]
rs9866409	1.00[AMR][1000 genomes]
rs9867520	1.00[CEU][hapmap]
rs9867888	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9871124	0.87[AFR][1000 genomes]
rs9873252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9874116	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9874305	1.00[AMR][1000 genomes]
rs9874776	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9876856	1.00[CEU][hapmap]
rs9877317	0.81[EUR][1000 genomes]
rs9877865	1.00[CEU][hapmap]
rs9882151	1.00[EUR][1000 genomes]
rs9883418	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751965	chr3:100299310-100462527	Enhancers Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2751966	chr3:100299310-100468500	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv2756284	chr3:100299329-100427937	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2752830	chr3:100299329-100442478	Enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv432464	chr3:100299329-100442478	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	esv2751967	chr3:100299329-100455139	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	esv2751968	chr3:100299329-100476713	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv432466	chr3:100299329-100476713	Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100276800-100309200	Weak transcription	NH-A	brain
2	chr3:100278200-100305800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:100298600-100309000	Weak transcription	Pancreas	Pancrea
4	chr3:100300600-100309200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:100301600-100309000	Weak transcription	Osteobl	bone
6	chr3:100302200-100306200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:100304200-100309200	Weak transcription	Fetal Stomach	stomach
8	chr3:100305000-100309200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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