Variant report

Variant	rs56118470
Chromosome Location	chr3:100212193-100212194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10049153	1.00[AMR][1000 genomes]
rs13318991	1.00[AMR][1000 genomes]
rs16842340	1.00[AMR][1000 genomes]
rs28377730	1.00[AMR][1000 genomes]
rs28830293	1.00[AMR][1000 genomes]
rs28844058	1.00[AMR][1000 genomes]
rs28873718	1.00[AMR][1000 genomes]
rs59106990	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59562996	1.00[AMR][1000 genomes]
rs6775160	1.00[AMR][1000 genomes]
rs6775560	1.00[AMR][1000 genomes]
rs72620018	1.00[AMR][1000 genomes]
rs72620019	1.00[AMR][1000 genomes]
rs72620020	1.00[AMR][1000 genomes]
rs72917813	1.00[AMR][1000 genomes]
rs72926203	1.00[AMR][1000 genomes]
rs72929300	1.00[AMR][1000 genomes]
rs72943274	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72943283	1.00[AMR][1000 genomes]
rs72945247	1.00[AMR][1000 genomes]
rs7624606	1.00[AMR][1000 genomes]
rs9814929	1.00[AMR][1000 genomes]
rs9817534	1.00[AMR][1000 genomes]
rs9817663	1.00[AMR][1000 genomes]
rs9818259	1.00[AMR][1000 genomes]
rs9818445	1.00[AMR][1000 genomes]
rs9830610	1.00[AMR][1000 genomes]
rs9832463	1.00[AMR][1000 genomes]
rs9850973	1.00[AMR][1000 genomes]
rs9852395	1.00[AMR][1000 genomes]
rs9857046	1.00[AMR][1000 genomes]
rs9858165	1.00[AMR][1000 genomes]
rs9861741	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9866409	1.00[AMR][1000 genomes]
rs9873252	1.00[AMR][1000 genomes]
rs9874116	1.00[AMR][1000 genomes]
rs9874305	1.00[AMR][1000 genomes]
rs9874776	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100210400-100212200	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr3:100210400-100212200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:100210400-100212600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:100210400-100212600	Active TSS	Brain Anterior Caudate	brain
5	chr3:100210600-100212200	Active TSS	Brain Germinal Matrix	brain
6	chr3:100210600-100212200	Active TSS	Brain Hippocampus Middle	brain
7	chr3:100210600-100212200	Active TSS	Fetal Muscle Trunk	muscle
8	chr3:100210600-100212200	Active TSS	A549	lung
9	chr3:100210600-100212400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:100210600-100212400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:100210600-100212400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:100210600-100212400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:100210600-100212400	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr3:100210600-100212400	Active TSS	Rectal Smooth Muscle	rectum
15	chr3:100210600-100212400	Active TSS	Right Atrium	heart
16	chr3:100210600-100212400	Active TSS	Stomach Smooth Muscle	stomach
17	chr3:100210600-100212800	Active TSS	HSMM	muscle
18	chr3:100210800-100212200	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr3:100210800-100212200	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr3:100210800-100212200	Flanking Active TSS	Primary hematopoietic stem cells	blood
21	chr3:100210800-100212200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:100210800-100212400	Active TSS	Aorta	Aorta
23	chr3:100210800-100212400	Active TSS	Fetal Kidney	kidney
24	chr3:100210800-100212400	Active TSS	Ovary	ovary
25	chr3:100210800-100212400	Active TSS	NHDF-Ad	bronchial
26	chr3:100210800-100212400	Active TSS	NHLF	lung
27	chr3:100210800-100212600	Active TSS	Placenta Amnion	Placenta Amnion
28	chr3:100210800-100212800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:100211000-100212200	Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr3:100211000-100212200	Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr3:100211000-100212200	Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr3:100211000-100212200	Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr3:100211000-100212200	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
34	chr3:100211000-100212200	Active TSS	Muscle Satellite Cultured Cells	--
35	chr3:100211000-100212200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr3:100211000-100212200	Active TSS	Fetal Brain Male	brain
37	chr3:100211000-100212200	Active TSS	Fetal Lung	lung
38	chr3:100211000-100212200	Active TSS	Rectal Mucosa Donor 29	rectum
39	chr3:100211000-100212200	Active TSS	Hela-S3	cervix
40	chr3:100211000-100212200	Active TSS	K562	blood
41	chr3:100211000-100212400	Active TSS	HUES64 Cell Line	embryonic stem cell
42	chr3:100211000-100212400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr3:100211000-100212400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr3:100211000-100212400	Active TSS	Fetal Intestine Large	intestine
45	chr3:100211000-100212400	Active TSS	Fetal Stomach	stomach
46	chr3:100211000-100212400	Active TSS	GM12878-XiMat	blood
47	chr3:100211000-100212400	Active TSS	HSMMtube	muscle
48	chr3:100211000-100212400	Active TSS	NH-A	brain
49	chr3:100211000-100212600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr3:100211000-100212600	Active TSS	Liver	Liver

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