Variant report

Variant	rs9861741
Chromosome Location	chr3:100219186-100219187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100210709..100213692-chr3:100216752..100220547,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181458	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10049153	1.00[AMR][1000 genomes]
rs13318991	1.00[AMR][1000 genomes]
rs16842340	1.00[AMR][1000 genomes]
rs28377730	1.00[AMR][1000 genomes]
rs28416993	1.00[EUR][1000 genomes]
rs28830293	1.00[AMR][1000 genomes]
rs28844058	1.00[AMR][1000 genomes]
rs28860520	1.00[EUR][1000 genomes]
rs28873718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56118470	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59106990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59562996	1.00[AMR][1000 genomes]
rs6775160	1.00[AMR][1000 genomes]
rs6775560	1.00[AMR][1000 genomes]
rs72620018	1.00[AMR][1000 genomes]
rs72620019	1.00[AMR][1000 genomes]
rs72620020	1.00[AMR][1000 genomes]
rs72917813	1.00[AMR][1000 genomes]
rs72926203	1.00[AMR][1000 genomes]
rs72929300	1.00[AMR][1000 genomes]
rs72943274	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72943278	1.00[EUR][1000 genomes]
rs72943283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72945208	1.00[EUR][1000 genomes]
rs72945247	1.00[AMR][1000 genomes]
rs7624606	1.00[AMR][1000 genomes]
rs9814929	1.00[AMR][1000 genomes]
rs9817534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9817663	1.00[AMR][1000 genomes]
rs9818259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9818445	1.00[AMR][1000 genomes]
rs9830610	1.00[AMR][1000 genomes]
rs9832463	1.00[AMR][1000 genomes]
rs9837310	1.00[EUR][1000 genomes]
rs9842423	1.00[EUR][1000 genomes]
rs9850973	1.00[AMR][1000 genomes]
rs9852395	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9857046	1.00[AMR][1000 genomes]
rs9858165	1.00[AMR][1000 genomes]
rs9866409	1.00[AMR][1000 genomes]
rs9873252	1.00[AMR][1000 genomes]
rs9874116	1.00[AMR][1000 genomes]
rs9874305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9874776	1.00[AMR][1000 genomes]
rs9876666	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100212400-100219200	Weak transcription	Aorta	Aorta
2	chr3:100212400-100222800	Weak transcription	Ovary	ovary
3	chr3:100212800-100224800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:100214000-100223600	Weak transcription	Fetal Lung	lung
5	chr3:100214600-100219400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:100215800-100219400	Weak transcription	Osteobl	bone
7	chr3:100216200-100219200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:100216200-100219200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:100216200-100219200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:100216200-100224400	Weak transcription	HSMMtube	muscle
11	chr3:100216200-100225400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:100216200-100229000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:100216400-100219400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:100216400-100219400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:100217400-100224800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:100217800-100220000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:100218600-100219800	Enhancers	Liver	Liver
18	chr3:100218600-100220400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr3:100218600-100221200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:100218800-100219400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr3:100219000-100220400	Enhancers	HSMM	muscle

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