Variant report

Variant	rs72943278
Chromosome Location	chr3:100219394-100219395
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100210709..100213692-chr3:100216752..100220547,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181458	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs28416993	1.00[EUR][1000 genomes]
rs28860520	1.00[EUR][1000 genomes]
rs28873718	1.00[EUR][1000 genomes]
rs59106990	1.00[EUR][1000 genomes]
rs72943274	1.00[EUR][1000 genomes]
rs72943283	1.00[EUR][1000 genomes]
rs72945208	1.00[EUR][1000 genomes]
rs9817534	1.00[EUR][1000 genomes]
rs9818259	1.00[EUR][1000 genomes]
rs9837310	1.00[EUR][1000 genomes]
rs9842423	1.00[EUR][1000 genomes]
rs9852395	1.00[EUR][1000 genomes]
rs9861741	1.00[EUR][1000 genomes]
rs9874305	1.00[EUR][1000 genomes]
rs9876666	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100212400-100222800	Weak transcription	Ovary	ovary
2	chr3:100212800-100224800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:100214000-100223600	Weak transcription	Fetal Lung	lung
4	chr3:100214600-100219400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:100215800-100219400	Weak transcription	Osteobl	bone
6	chr3:100216200-100224400	Weak transcription	HSMMtube	muscle
7	chr3:100216200-100225400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:100216200-100229000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:100216400-100219400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:100216400-100219400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:100217400-100224800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:100217800-100220000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:100218600-100219800	Enhancers	Liver	Liver
14	chr3:100218600-100220400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr3:100218600-100221200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:100218800-100219400	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr3:100219000-100220400	Enhancers	HSMM	muscle
18	chr3:100219200-100219600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr3:100219200-100219600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr3:100219200-100219600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr3:100219200-100219600	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr3:100219200-100219600	ZNF genes & repeats	Aorta	Aorta
23	chr3:100219200-100219800	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr3:100219200-100219800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:100219200-100219800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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