Variant report

Variant	rs28873718
Chromosome Location	chr3:100208240-100208241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100207350..100209197-chr3:100209386..100212217,2	MCF-7	breast:
2	chr3:100120020..100122994-chr3:100208186..100210506,3	K562	blood:

Variant related genes	Relation type
ENSG00000206535	Chromatin interaction
ENSG00000181458	Chromatin interaction
ENSG00000154174	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10049153	1.00[AMR][1000 genomes]
rs13318991	1.00[AMR][1000 genomes]
rs16842340	1.00[AMR][1000 genomes]
rs28377730	1.00[AMR][1000 genomes]
rs28416993	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28830293	1.00[AMR][1000 genomes]
rs28844058	1.00[AMR][1000 genomes]
rs28860520	1.00[EUR][1000 genomes]
rs56118470	1.00[AMR][1000 genomes]
rs59106990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59562996	1.00[AMR][1000 genomes]
rs6775160	1.00[AMR][1000 genomes]
rs6775560	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72620018	1.00[AMR][1000 genomes]
rs72620019	1.00[AMR][1000 genomes]
rs72620020	1.00[AMR][1000 genomes]
rs72917813	1.00[AMR][1000 genomes]
rs72926203	1.00[AMR][1000 genomes]
rs72929300	1.00[AMR][1000 genomes]
rs72943274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72943278	1.00[EUR][1000 genomes]
rs72943283	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72945208	1.00[EUR][1000 genomes]
rs72945247	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7624606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9814929	1.00[AMR][1000 genomes]
rs9817534	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9817663	1.00[AMR][1000 genomes]
rs9818259	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9818445	1.00[AMR][1000 genomes]
rs9830610	1.00[AMR][1000 genomes]
rs9832463	1.00[AMR][1000 genomes]
rs9842423	1.00[EUR][1000 genomes]
rs9850973	1.00[AMR][1000 genomes]
rs9852395	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9857046	1.00[AMR][1000 genomes]
rs9858165	1.00[AMR][1000 genomes]
rs9861741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9866409	1.00[AMR][1000 genomes]
rs9873252	1.00[AMR][1000 genomes]
rs9874116	1.00[AMR][1000 genomes]
rs9874305	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9874776	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100205000-100210400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:100205000-100210800	Weak transcription	K562	blood
3	chr3:100206600-100210600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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