Variant report

Variant	rs28860520
Chromosome Location	chr3:100208163-100208164
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs28416993	1.00[EUR][1000 genomes]
rs28873718	1.00[EUR][1000 genomes]
rs59106990	1.00[EUR][1000 genomes]
rs72943274	1.00[EUR][1000 genomes]
rs72943278	1.00[EUR][1000 genomes]
rs72943283	1.00[EUR][1000 genomes]
rs72945208	1.00[EUR][1000 genomes]
rs9817534	1.00[EUR][1000 genomes]
rs9818259	1.00[EUR][1000 genomes]
rs9842423	1.00[EUR][1000 genomes]
rs9852395	1.00[EUR][1000 genomes]
rs9861741	1.00[EUR][1000 genomes]
rs9874305	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100205000-100210400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:100205000-100210800	Weak transcription	K562	blood
3	chr3:100206600-100210600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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